Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

KP.3.1.1+S:F186S(71 seqs, >10 places) #2801

Open
xz-keg opened this issue Oct 9, 2024 · 4 comments
Open

KP.3.1.1+S:F186S(71 seqs, >10 places) #2801

xz-keg opened this issue Oct 9, 2024 · 4 comments

Comments

@xz-keg
Copy link
Contributor

xz-keg commented Oct 9, 2024

From sars-cov-2-variants/lineage-proposals#2084

Recently I train a GPT model on viral evolution for SARS-Cov-2 using data up to early-JN.1, and T22119C-S:F186S is its top prediction when inferenced on KP.3.1.1-backbone.
Now there's really a S:F186S sub-branch emerging.

KP.3.1.1+T22119C(S:F186S)

GISAID query: T22119C, A13121T, -25595, -28612, -6536
No. of seqs: 53(Ireland 14 Portugal 4 UK 9(Scotland) Slovenia 1 Spain 8 Sweden 11 USA 7(AK,NY,UT, GBW from UK))

First: EPI_ISL_19296890, Spain, 2024-5-22
Latest: EPI_ISL_19451861, GBW from UK, 2024-9-22

usher
image

@FedeGueli
Copy link
Contributor

58 France Ireland

@xz-keg
Copy link
Contributor Author

xz-keg commented Oct 16, 2024

60, Italy

@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(53 seqs, 9 places) KP.3.1.1+S:F186S(60 seqs, >10 places) Oct 16, 2024
@FedeGueli
Copy link
Contributor

One of the fastest Kp.3.1.1 descendants , along with 435S D111N and 572I one of the few beneficial spike mutations for Kp.3.1.1

@xz-keg
Copy link
Contributor Author

xz-keg commented Oct 21, 2024

64, Canary Islands

@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(60 seqs, >10 places) KP.3.1.1+S:F186S(64 seqs, >10 places) Oct 21, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(64 seqs, >10 places) KP.3.1.1+S:F186S(71 seqs, >10 places) Oct 27, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants