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KP.4.1 got Deflirt and it is still circulating in three continents in September (70, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) #2800

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FedeGueli opened this issue Oct 8, 2024 · 1 comment

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@FedeGueli
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Transferred from sars-cov-2-variants/lineage-proposals#2128

This went unnoticed ( or we confounded it with KP.4.1.3) maybe due the fact Usher puts it under S:S31F but instead all the sequences have S:S31del.
It managed to fly under the radar until September when it was samples 5 times from three continents (Australia, France, Spain, Florida)
Interestingly it is converging now toward S:T22N with a mini branch sampled in Australia in September

KP.4.1 > S:S31del (del21653-55)
Query: G26918A,del21653,T3565C
Samples: 62
Countries: 14 countries including Iraq
Query for S:T22N subbranch:T7061C, C7482T, G19656A
Tree:
Screenshot 2024-10-07 alle 19 35 32
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_16eb4_416c90.json?label=id:node_7190898

@FedeGueli FedeGueli changed the title KP.4.1 got Deflirt and it is still circulating in three continents in September (62, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) KP.4.1 got Deflirt and it is still circulating in three continents in September (64, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) Oct 9, 2024
@FedeGueli FedeGueli changed the title KP.4.1 got Deflirt and it is still circulating in three continents in September (64, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) KP.4.1 got Deflirt and it is still circulating in three continents in September (67, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) Oct 14, 2024
@FedeGueli FedeGueli changed the title KP.4.1 got Deflirt and it is still circulating in three continents in September (67, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) KP.4.1 got Deflirt and it is still circulating in three continents in September (70, 14 places including Iraq) with a recent minibranch adding S:T22N (2, Australia, QLD) Oct 18, 2024
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