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KP.2.3/KP.3.3 recombinant (29 seqs, 5 places, 20 with S:R346T) #2783
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This branch has slowed down a lot now. You can close this issue @aviczhl2 |
Not slow, what we should wait for is for appearing in numbers outside the Utah Cluster. |
I don't really trust those Texas/Utah clusters - the losing and regaining S:R346T is a bit add as well. Would only designate if it clearly spreads more widely, with more labs involved. |
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KP.2.3/KP.3.3 recombinant (22 seqs, 4 places in USA, 15 with S:R346T)
KP.2.3/KP.3.3 recombinant (23 seqs, 4 places in USA, 16 with S:R346T)
Oct 6, 2024
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KP.2.3/KP.3.3 recombinant (23 seqs, 4 places in USA, 16 with S:R346T)
KP.2.3/KP.3.3 recombinant (24 seqs, 4 places in USA, 17 with S:R346T)
Oct 11, 2024
27,England. |
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KP.2.3/KP.3.3 recombinant (24 seqs, 4 places in USA, 17 with S:R346T)
KP.2.3/KP.3.3 recombinant (27 seqs, 5 places, 19 with S:R346T)
Oct 16, 2024
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KP.2.3/KP.3.3 recombinant (27 seqs, 5 places, 19 with S:R346T)
KP.2.3/KP.3.3 recombinant (28 seqs, 5 places, 19 with S:R346T)
Oct 20, 2024
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KP.2.3/KP.3.3 recombinant (28 seqs, 5 places, 19 with S:R346T)
KP.2.3/KP.3.3 recombinant (29 seqs, 5 places, 20 with S:R346T)
Oct 27, 2024
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From sars-cov-2-variants/lineage-proposals#2049
It seems that a lot of new DeFLiRT+DeFLuQE recombinants are submitted these days.
Among them, this seems a very interesting one, it loses S:R346T during recomb in exchange for S:Q493E, but gains S:R346T independently afterwards.
KP.2.3--KP.3.3
Breakpoint between 22001 and 22598
Additional mutations: C4891T, C5310T, C6471A,A18642C,del21653_21655
Orf1a:T1682I, T2069N
S:S31-
C4891T, C5310T, C6471A,A18642C,del21653_21655 from a KP.2.3 branch
GISAID query: C4891T, C22000A, G28884C
No. of seqs: 22(USA-CA,UT,TX,NY)
First: EPI_ISL_19339481, Texas, 2024-7-10
Latest: EPI_ISL_19433553, Utah, 2024-9-16
GISAID query for S:R346T sub-branch: C4891T, C22000A, G28884C,G22599C (15 seqs)
Usher places it on a flip-flop reversion branch. It shouldn't have Orf1a:A690V.
https://nextstrain.org/fetch/raw.githubusercontent.com/aviczhl2/lineage_proposal_jsons/main/kp_2_3_kp_3_3_recomb.json?label=id:node_5516374
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