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KP.3.1.1+S:N1187H( 84 seqs, >10 places, 7 with S:S46L) #2778

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xz-keg opened this issue Sep 17, 2024 · 4 comments
Open

KP.3.1.1+S:N1187H( 84 seqs, >10 places, 7 with S:S46L) #2778

xz-keg opened this issue Sep 17, 2024 · 4 comments

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@xz-keg
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xz-keg commented Sep 17, 2024 •
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From sars-cov-2-variants/lineage-proposals#1867
KP.3.1.1+A25121C(S:N1187H)

GISAID query: A25121C, C12616T, A13121T
GISAID query for S:S46L branch: C21699T,C4551T (By @FedeGueli )
No. of seqs: 42(Spain 3 UK 6 France 5 Germany 5 Ireland 7 Netherlands 1 Poland 1 Sweden 3 USA 8(2 from Netherlands) Canada 3)

First: EPI_ISL_19267885,Spain, 2024-6-10
Latest: EPI_ISL_19415757, USA, 2024-9-3

usher
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@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 42 seqs, 11 countries) KP.3.1.1+S:N1187H( 45 seqs, 11 countries) Sep 22, 2024
@FedeGueli
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53

@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 45 seqs, 11 countries) KP.3.1.1+S:N1187H( 56 seqs, >10 places) Sep 27, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 56 seqs, >10 places) KP.3.1.1+S:N1187H( 68 seqs, >10 places) Oct 6, 2024
@FedeGueli
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FedeGueli commented Oct 8, 2024 •
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There is now a branch with S:S46L found with C21699T,C4551T counting 5 from 3 places
Screenshot 2024-10-08 alle 12 58 30
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_66c2c_4f7a80.json?c=userOrOld&label=id:node_7229182

Shaped as a cluster likely some sort of superspreading event

@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 68 seqs, >10 places) KP.3.1.1+S:N1187H( 68 seqs, >10 places, 5 with S:S46L) Oct 8, 2024
@FedeGueli
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72 last samples from three different countries

@FedeGueli
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deleted a post i used the query for XDV.1.5

@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 68 seqs, >10 places, 5 with S:S46L) KP.3.1.1+S:N1187H( 81 seqs, >10 places, 6 with S:S46L) Oct 19, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 81 seqs, >10 places, 6 with S:S46L) KP.3.1.1+S:N1187H( 83 seqs, >10 places, 6 with S:S46L) Oct 24, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:N1187H( 83 seqs, >10 places, 6 with S:S46L) KP.3.1.1+S:N1187H( 84 seqs, >10 places, 7 with S:S46L) Oct 29, 2024
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@xz-keg @FedeGueli