diff --git a/lineage_notes.txt b/lineage_notes.txt index 5ce21fb8..9d2e373d 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1295,6 +1295,7 @@ LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/lineage-proposals#1558 LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO, from sars-cov-2-variants/lineage-proposals#1558 +LF.3.1.2 Alias of B.1.1.529.2.86.1.1.16.1.3.1.2, S:D745A, South America LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*, from sars-cov-2-variants/lineage-proposals#1590 LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T @@ -4278,6 +4279,7 @@ XEG Recombinant lineage of JN.3.2.1, GJ.1.2, JN.3.2.1, GJ.1.2 (breakpoints: 2940 XEH Recombinant lineage of KP.1.1.3, KP.3 (breakpoint: 22599-23039), from #2790 XEJ Recombinant lineage of JN.1, LF.1.1.1 (breakpoint: 6574-16550), from #2786 XEK Recombinant lineage of KP.2.3, XEC (breakpoint: 9286-15402), from #2774 +XEL Recombinant lineage of KS.1.1.2, JN.1 (breakpoint: 22929-24820), from #2751 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index baadbc80..2ed2cdf5 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2553069,10 +2553069,6 @@ HongKong/VB24151551/2024,KP.2.3.3 USA/NY-PRL-240514_81G04/2024,KP.2.3.3 Singapore/R22MQ82/2024,KP.2.3.3 USA/NY-GBW-GKISBBBB60445/2024,KP.2.3.3 -USA/FL-GBW-GKPLAAAA23937/2024,LF.3.1 -USA/CA-KP002357/2024,LF.3.1 -USA/CA-MCPHL-GBD00272/2024,LF.3.1 -USA/CA-KP002380/2024,LF.3.1 USA/2024CV0744/2024,LF.3.1 Australia/WA16118/2024,KP.3.1.2 England/CLIMB-CM7YR1M8/2024,KP.3.1.2 @@ -2574132,3 +2574128,531 @@ USA/NJ-CDC-LC1117542/2024,KS.1.1.2 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100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -418,6 +418,7 @@ "XEG": ["JN.3.2.1","GJ.1.2","JN.3.2.1","GJ.1.2"], "XEH": ["KP.1.1.3","KP.3"], "XEJ": ["JN.1", "LF.1.1.1"], - "XEK": ["KP.2.3", "XEC"] + "XEK": ["KP.2.3", "XEC"], + "XEL": ["KS.1.1.2", "JN.1"] }