From 76eb0368a2b10685bfad903f29a048f627617ae2 Mon Sep 17 00:00:00 2001
From: Nadia Wallace <nwallace@counsyl.com>
Date: Mon, 16 Apr 2018 10:36:05 -0700
Subject: [PATCH 1/2] don't use pip.req in setup

---
 .gitignore |  2 ++
 setup.py   | 10 +++++-----
 2 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/.gitignore b/.gitignore
index ebbd175..f816d37 100644
--- a/.gitignore
+++ b/.gitignore
@@ -7,6 +7,7 @@
 # FASTA files
 *.fa.seqlen
 *.fa.pureseq
+*.fa.fai
 
 # C extensions
 *.so
@@ -24,6 +25,7 @@ develop-eggs
 .installed.cfg
 lib
 lib64
+.venv
 
 # Installer logs
 pip-log.txt
diff --git a/setup.py b/setup.py
index e6d7389..0cd5b37 100644
--- a/setup.py
+++ b/setup.py
@@ -3,8 +3,6 @@
 from __future__ import unicode_literals
 
 from setuptools import setup
-from pip.req import parse_requirements
-from pip.download import PipSession
 import sys
 
 description = ("This library provides a simple to use Python API for parsing, "
@@ -31,9 +29,11 @@ def main():
         include_package_data=True,
         scripts=[],
         install_requires=['pip>=1.2'],
-        tests_require=[str(line.req) for line in
-                       parse_requirements('requirements-dev.txt',
-                                          session=PipSession())],
+        tests_require=[
+          'flake8==2.2.5',
+          'nose==1.3.7',
+          'pyfaidx==0.5.0.1',
+        ],
     )
 
 

From 45d1fa1553c12724a387475d495ecc5ab89b4d13 Mon Sep 17 00:00:00 2001
From: Nadia Wallace <nwallace@counsyl.com>
Date: Mon, 16 Apr 2018 10:48:52 -0700
Subject: [PATCH 2/2] bump version to 0.11.1

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 0cd5b37..3f94c25 100644
--- a/setup.py
+++ b/setup.py
@@ -20,7 +20,7 @@ def main():
 
     setup(
         name='pyhgvs',
-        version='0.11.0',
+        version='0.11.1',
         description='HGVS name parsing and formatting',
         long_description=description,
         author='Matt Rasmussen',