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.travis.yml
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# vim ft=yaml
# travis-ci.org definition for DataLad build
language: python
# Do full clone (~10 extra seconds) to fetch all tags.
# Otherwise we might be missing the tags for maint PRs
# whenever those maint releases were not yet merged into master.
# TODO: specify TRAVIS_BRANCH if ever would become possible
#(support request was sent to Travis)
git:
depth: false
services:
- docker
python:
- 3.7
cache:
- apt
env:
global:
# will be used in the matrix, where neither other variable is used
- BOTO_CONFIG=/tmp/nowhere
- DATALAD_TESTS_SSH=1
- DATALAD_LOG_ENV=GIT_SSH_COMMAND
- TESTS_TO_PERFORM=datalad
# Should be an array, travis breaks on it, define/adjust in the "before_install"
#- PYTEST_OPTS=( -v )
# Note, that there's "turtle" as well, which is always excluded from
# running on Travis.
- PYTEST_SELECTION="integration or usecase or slow or network"
- PYTEST_SELECTION_OP="not " # so it would be "not (integration or usecase)"
- DATALAD_DATASETS_TOPURL=https://datasets-tests.datalad.org
# How/which git-annex we install. conda's build would be the fastest, but it must not
# get ahead in PATH to not shadow travis' python
- _DL_ANNEX_INSTALL_SCENARIO="miniconda=py37_23.1.0-1 --python-match minor --batch git-annex=8.20201007 -m conda"
matrix:
include:
# Additional custom ones
- python: 3.8
# Single run for Python 3.7
env:
# Run all tests in a single whoop here
# We cannot have empty -A selector, so the one which always will be fulfilled
- PYTEST_SELECTION=
- PYTEST_SELECTION_OP=not
# To test https://github.com/datalad/datalad/pull/4342 fix.
# From our testing in that PR seems to have no effect, but kept around since should not hurt.
- LC_ALL=ru_RU.UTF-8
- python: 3.9
dist: bionic # Xenial doesn't have 3.8 pre-installed (only 3.8-dev).
env:
- PYTEST_SELECTION=
- PYTEST_SELECTION_OP=not
# Two matrix runs for "recent python and git-annex with the recent supported by git annex
# new version of repo" and various extra options/features enabled for git-annex
- python: '3.11'
dist: focal
env:
- PYTEST_SELECTION=
- PYTEST_SELECTION_OP=not
- DATALAD_REPO_VERSION=10
- _DL_ANNEX_INSTALL_SCENARIO="miniconda --channel conda-forge --python-match minor --batch git-annex -m conda"
- DATALAD_TESTS_GITCONFIG="\n[annex]\n stalldetection = 1KB/120s\n"
- python: '3.11'
dist: focal
env:
- PYTEST_SELECTION=
- PYTEST_SELECTION_OP=
- DATALAD_REPO_VERSION=10
- _DL_ANNEX_INSTALL_SCENARIO="miniconda --channel conda-forge --python-match minor --batch git-annex -m conda"
- DATALAD_TESTS_GITCONFIG="\n[annex]\n stalldetection = 1KB/120s\n"
- if: type = cron
python: 3.7
# Single run for Python 3.7
env:
# Run all tests in a single whoop here
# We cannot have empty -A selector, so the one which always will be fulfilled
- PYTEST_SELECTION=
- PYTEST_SELECTION_OP=not
- python: 3.7
# Split runs for v6 since a single one is too long now
env:
- PYTEST_SELECTION_OP=not
- DATALAD_SSH_MULTIPLEX__CONNECTIONS=0
- DATALAD_RUNTIME_PATHSPEC__FROM__FILE=always
- _DL_ANNEX_INSTALL_SCENARIO="miniconda=py37_23.1.0-1 --python-match minor --batch git-annex=10.20220525 -m conda"
- python: 3.7
env:
- PYTEST_SELECTION_OP=""
- DATALAD_SSH_MULTIPLEX__CONNECTIONS=0
- DATALAD_RUNTIME_PATHSPEC__FROM__FILE=always
- _DL_ANNEX_INSTALL_SCENARIO="miniconda=py37_23.1.0-1 --python-match minor --batch git-annex=8.20210310 -m conda"
# To test https://github.com/datalad/datalad/pull/4342 fix in case of no "not" for pytest.
# From our testing in that PR seems to have no effect, but kept around since should not hurt.
- LANG=bg_BG.UTF-8
- python: 3.7
# Run slow etc tests under a single tricky scenario
env:
- _DL_TMPDIR="/var/tmp/sym link"
- PYTEST_SELECTION_OP=""
# And the leading - in filenames for the most challenge
- DATALAD_TESTS_OBSCURE_PREFIX=-
- DATALAD_LOG_TRACEBACK=collide # just a smoke test for now
- python: 3.7
# A run loaded with various customizations to smoke test those functionalities
# apparently moving symlink outside has different effects on abspath
# see https://github.com/datalad/datalad/issues/878
env:
# eventually: - _DL_TMPDIR="/var/tmp/sym ссылка"
- _DL_TMPDIR="/var/tmp/sym link"
# and obscure the names more a bit
- DATALAD_TESTS_OBSCURE_PREFIX=-
# By default no logs will be output. This one is to test with log output at INFO level
- DATALAD_LOG_LEVEL=INFO
- DATALAD_LOG_TRACEBACK=1 # just a smoke test for now
- DATALAD_LOG_VMEM=1
- DATALAD_RUNTIME_MAX__BATCHED=2
- DATALAD_RUNTIME_MAX__INACTIVE__AGE=10
- python: 3.7
# By default no logs will be output. This one is to test with low level but dumped to /dev/null
env:
- DATALAD_LOG_LEVEL=2
- DATALAD_LOG_TARGET=/dev/null
- DATALAD_TESTS_PROTOCOLREMOTE=1
- DATALAD_TESTS_DATALADREMOTE=1
- DATALAD_LOG_CWD=1
- DATALAD_LOG_OUTPUTS=1
- DATALAD_LOG_ENV=1
- DATALAD_LOG_STDIN=1
- DATALAD_TESTS_UI_BACKEND=console
- DATALAD_TESTS_OBSCURE_PREFIX=-
- DATALAD_SEED=1
- GIT_AUTHOR_DATE="Thu, 07 Apr 2005 22:13:13 +0200"
- GIT_AUTHOR_NAME=blah
- GIT_COMMITTER_DATE="Thu, 07 Apr 2005 22:13:13 +0200"
- GIT_COMMITTER_NAME=blah
- python: 3.7
# Test some under NFS mount (only selected sub-set)
env:
# do not run SSH-based tests due to stall(s)
# https://github.com/datalad/datalad/pull/4172
- DATALAD_TESTS_SSH=0
- _DL_TMPDIR="/tmp/nfsmount"
- TESTS_TO_PERFORM="datalad.tests datalad.support"
#
# The ones to run only on weekends against master.
# They will not contribute to coverage etc, but might lead to failed status
#
# run with minimal supported git-annex version as defined in AnnexRepo.GIT_ANNEX_MIN_VERSION
# TODO: ATM we do not have that minimal version as a Debian package in
# snapshots!
- if: type = cron
python: 3.7
env:
- _DL_ANNEX_INSTALL_SCENARIO="miniconda=py37_23.1.0-1 --python-match minor --batch git-annex=8.20200309 -m conda"
# Run with git's master branch rather the default one on the system.
- if: type = cron
python: 3.7
env:
- DATALAD_USE_DEFAULT_GIT=1
- _DL_UPSTREAM_GIT=1
# Run with our reported minimum Git version.
- if: type = cron
python: 3.7
env:
- DATALAD_USE_DEFAULT_GIT=1
- _DL_MIN_GIT=1
- PATH="$PWD/git-src/bin-wrappers/:$PATH"
- if: type = cron
python: 3.7
env:
# to test operation under root since also would consider FS "crippled" due to
# ability to rewrite R/O files
- PYTEST_WRAPPER="sudo -E"
# no key authentication for root:
- DATALAD_TESTS_SSH=0
- if: type = cron
python: 3.7
env:
- DATALAD_TESTS_NONETWORK=1
# must operate nicely with those env variables set
- http_proxy=
- https_proxy=
- if: type = cron
python: 3.7
# Test under NFS mount (full, only in master)
env:
- _DL_TMPDIR="/tmp/nfsmount"
allow_failures:
# Test under NFS mount (full, only in master)
- if: type = cron
python: 3.7
env:
- _DL_TMPDIR="/tmp/nfsmount"
# Causes complete laptop or travis instance crash atm, but survives in a docker
# need to figure it out (looks like some PID explosion)
# - python: 3.7
# # we would need to migrate to boto3 to test it fully, but SSH should work
# env:
# - DATALAD_TESTS_SSH=1
# - UNSET_S3_SECRETS=1
before_install:
- PYTEST_OPTS=( -v )
# If we requested to run only not slow (typically <10sec) tests, fail if a test
# takes 3x more than that - it needs to get @slow or @turtle annotation
- if echo "$PYTEST_SELECTION_OP($PYTEST_SELECTION)" | grep -q "^not.*slow"; then
PYTEST_OPTS=( "${PYTEST_OPTS[@]}" --doctest-modules --durations=0 --durations-min=5 --fail-slow 60 );
export DATALAD_TESTS_SETUP_TESTREPOS=1;
fi
# Show git describe output to ensure that we did fetch all the tags etc
- git describe
# Just in case we need to check if nfs is there etc
- sudo lsmod
# The ultimate one-liner setup for NeuroDebian repository
- bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
- travis_retry sudo apt-get update -qq
- travis_retry sudo apt-get install eatmydata # to speedup some installations
- tools/ci/prep-travis-forssh.sh
- tools/ci/debians_disable_outdated_ssl_cert
# Install various basic dependencies
- travis_retry sudo eatmydata apt-get install zip pandoc p7zip-full
# needed for tests of patool compression fall-back solution
- travis_retry sudo eatmydata apt-get install xz-utils
- travis_retry sudo eatmydata apt-get install shunit2
# Configure _DL_TMPDIR before trying install git-annex -- script might use it
- if [[ "${_DL_TMPDIR:-}" =~ .*/sym\ link ]]; then echo "Symlinking $_DL_TMPDIR"; ln -s /tmp "$_DL_TMPDIR"; fi
- if [[ "${_DL_TMPDIR:-}" =~ .*/d\ i\ r ]]; then echo "mkdir $_DL_TMPDIR"; mkdir -p "$_DL_TMPDIR"; fi
- if [[ "${_DL_TMPDIR:-}" =~ .*/nfsmount ]]; then echo "mkdir $_DL_TMPDIR"; mkdir -p "$_DL_TMPDIR" "${_DL_TMPDIR}_"; echo "/tmp/nfsmount_ localhost(rw)" | sudo bash -c 'cat - > /etc/exports'; sudo apt-get install -y nfs-kernel-server; sudo exportfs -a; sudo mount -t nfs localhost:/tmp/nfsmount_ /tmp/nfsmount; fi
# Maybe build install custom git.
- if [ ! -z "${_DL_UPSTREAM_GIT:-}" ]; then source tools/ci/install-upstream-git.sh; fi
- if [ ! -z "${_DL_MIN_GIT:-}" ]; then tools/ci/install-minimum-git.sh; fi
# Install git-annex
- pip install datalad-installer
- eval datalad-installer --sudo ok -E new.env ${_DL_ANNEX_INSTALL_SCENARIO}
- source new.env && cat new.env >> ~/.bashrc
- pip install --upgrade pip
install:
- git config --global user.email "[email protected]"
- git config --global user.name "Travis Almighty"
# we are pip sudo install below and versioneer needs to run git. recent git needs to
# be made certain it is safe to do
- sudo git config --global --add safe.directory $PWD
- cd ..; pip install -q codecov; cd -
- pip install -r requirements-devel.txt
# So we could test under sudo -E with PATH pointing to installed location
- sudo sed -i -e 's/^Defaults.*secure_path.*$//' /etc/sudoers
# git-annex workaround. TODO: remove - should not be needed
- if [[ "${_DL_TMPDIR:-}" =~ .*/nfsmount ]]; then sudo git config --system annex.pidlock true ; fi
script:
# Now it should be safe to point TMPDIR to a "tricky" setup just for the purpose of testing
- if [ -n "${_DL_TMPDIR:-}" ]; then export TMPDIR="${_DL_TMPDIR}"; fi
# Test installation for user
- sudo pip install --user .
# Report WTF information using system wide installed version
- datalad wtf
- mkdir -p __testhome__
- cd __testhome__
# Run tests
# Note: adding --log-cli-level=INFO would result in DATALAD_LOG_TARGET=/dev/null being not
# in effect, dumping too many logs.
- set -x; http_proxy=
PATH=$PWD/../tools/coverage-bin:$PATH
$PYTEST_WRAPPER python
-m pytest "${PYTEST_OPTS[@]}"
-c ../tox.ini
-n 2
-m "${PYTEST_SELECTION:+$PYTEST_SELECTION_OP($PYTEST_SELECTION) and }not(turtle)"
--doctest-modules
--cov=datalad
--cov-report=
--pyargs
$TESTS_TO_PERFORM
- cd ..
after_success:
# cron jobs test more and then PRs will be falling behind since they would not
# trigger some codepaths. So submit coverage only from non-cron jobs, but report for all
- cd __testhome__;
- python -m coverage combine -a /tmp/.coverage-entrypoints-*;
- python -m coverage report;
- if [ ! ${TRAVIS_EVENT_TYPE} = "cron" ]; then
codecov;
fi
# makes it only more difficult to comprehend the failing output. Enable only when necessary
# for a particular debugging
#after_failure:
# - if [ ! -z "$DATALAD_TESTS_NONETWORK" ]; then sudo route add -net 0.0.0.0 netmask 0.0.0.0 dev lo; fi
# - DATALAD_LOG_LEVEL=DEBUG $PYTEST_WRAPPER `which pytest` -s -v --doctest-modules --cov datalad --log-cli-level=DEBUG
# - if [ ! -z "$DATALAD_TESTS_NONETWORK" ]; then sudo route del -net 0.0.0.0 netmask 0.0.0.0 dev lo; fi