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N50 values #84

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mallen6 opened this issue Oct 18, 2023 · 0 comments

mallen6 commented Oct 18, 2023

Hello,
I noticed that my CheckM2 results are giving slightly higher N50 values for my MAGs than the CheckM1 outputs.

In all cases the genome sizes and % GC content are being reported as identical.

Does CheckM2 apply a contig length cutoff? Or is there some other reason this might be happening?

Thanks,
M

N50 values checkm1 checkm2

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