colmap2mvsnet.py

#!/usr/bin/env python
"""
Copyright 2019, Jingyang Zhang and Yao Yao, HKUST. Model reading is provided by COLMAP.
Preprocess script.
"""

from __future__ import print_function

import collections
import struct
import numpy as np
import multiprocessing as mp
import os
import argparse
import shutil
import cv2
import time


#============================ read_model.py ============================#
CameraModel = collections.namedtuple(
    "CameraModel", ["model_id", "model_name", "num_params"])
Camera = collections.namedtuple(
    "Camera", ["id", "model", "width", "height", "params"])
BaseImage = collections.namedtuple(
    "Image", ["id", "qvec", "tvec", "camera_id", "name", "xys", "point3D_ids"])
Point3D = collections.namedtuple(
    "Point3D", ["id", "xyz", "rgb", "error", "image_ids", "point2D_idxs"])

class Image(BaseImage):
    def qvec2rotmat(self):
        return qvec2rotmat(self.qvec)


CAMERA_MODELS = {
    CameraModel(model_id=0, model_name="SIMPLE_PINHOLE", num_params=3),
    CameraModel(model_id=1, model_name="PINHOLE", num_params=4),
    CameraModel(model_id=2, model_name="SIMPLE_RADIAL", num_params=4),
    CameraModel(model_id=3, model_name="RADIAL", num_params=5),
    CameraModel(model_id=4, model_name="OPENCV", num_params=8),
    CameraModel(model_id=5, model_name="OPENCV_FISHEYE", num_params=8),
    CameraModel(model_id=6, model_name="FULL_OPENCV", num_params=12),
    CameraModel(model_id=7, model_name="FOV", num_params=5),
    CameraModel(model_id=8, model_name="SIMPLE_RADIAL_FISHEYE", num_params=4),
    CameraModel(model_id=9, model_name="RADIAL_FISHEYE", num_params=5),
    CameraModel(model_id=10, model_name="THIN_PRISM_FISHEYE", num_params=12)
}
CAMERA_MODEL_IDS = dict([(camera_model.model_id, camera_model) \
                         for camera_model in CAMERA_MODELS])


def read_next_bytes(fid, num_bytes, format_char_sequence, endian_character="<"):
    """Read and unpack the next bytes from a binary file.
    :param fid:
    :param num_bytes: Sum of combination of {2, 4, 8}, e.g. 2, 6, 16, 30, etc.
    :param format_char_sequence: List of {c, e, f, d, h, H, i, I, l, L, q, Q}.
    :param endian_character: Any of {@, =, <, >, !}
    :return: Tuple of read and unpacked values.
    """
    data = fid.read(num_bytes)
    return struct.unpack(endian_character + format_char_sequence, data)

def read_cameras_text_id(path):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::WriteCamerasText(const std::string& path)
        void Reconstruction::ReadCamerasText(const std::string& path)
    """
    cameras = {}
    max_id = 0
    id_valid = []
    with open(path, "r") as fid:
        while True:
            line = fid.readline()
            if not line:
                break
            line = line.strip()
 
            if len(line) > 0 and line[0] != "#":
                elems = line.split()
                camera_id = int(elems[0])
                id_valid.append(camera_id)
                max_id = max(max_id, camera_id)
                #print('camera_id,max_id:',camera_id,max_id)
            #id_all = range(1,max_id+1)
            #id_none = list(set(id_all).difference(set(id_valid)))

    return max_id, id_valid 

def read_images_text_id(path):
    """
    get the valid id in images.txt
    """
    max_id = 0
    id_valid = []
    with open(path, "r") as fid:
        while True:
            line = fid.readline()
            if not line:
                break
            line = line.strip()
 
            if len(line) > 0 and line[0] != "#":
                elems = line.split()
                image_id = int(elems[0])
                id_valid.append(image_id)
                max_id = max(max_id, image_id)
                elems = fid.readline()

    return max_id, id_valid 


def read_cameras_text(path):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::WriteCamerasText(const std::string& path)
        void Reconstruction::ReadCamerasText(const std::string& path)
    """
    cameras = {}
    with open(path, "r") as fid:
        while True:
            line = fid.readline()
            if not line:
                break
            line = line.strip()
            if len(line) > 0 and line[0] != "#":
                elems = line.split()
                camera_id = int(elems[0])
                model = elems[1]
                width = int(elems[2])
                height = int(elems[3])
                params = np.array(tuple(map(float, elems[4:])))
                cameras[camera_id] = Camera(id=camera_id, model=model,
                                            width=width, height=height,
                                            params=params)
    return cameras


def read_cameras_binary(path_to_model_file):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::WriteCamerasBinary(const std::string& path)
        void Reconstruction::ReadCamerasBinary(const std::string& path)
    """
    cameras = {}
    with open(path_to_model_file, "rb") as fid:
        num_cameras = read_next_bytes(fid, 8, "Q")[0]
        for camera_line_index in range(num_cameras):
            camera_properties = read_next_bytes(
                fid, num_bytes=24, format_char_sequence="iiQQ")
            camera_id = camera_properties[0]
            model_id = camera_properties[1]
            model_name = CAMERA_MODEL_IDS[camera_properties[1]].model_name
            width = camera_properties[2]
            height = camera_properties[3]
            num_params = CAMERA_MODEL_IDS[model_id].num_params
            params = read_next_bytes(fid, num_bytes=8*num_params,
                                     format_char_sequence="d"*num_params)
            cameras[camera_id] = Camera(id=camera_id,
                                        model=model_name,
                                        width=width,
                                        height=height,
                                        params=np.array(params))
        assert len(cameras) == num_cameras
    return cameras


def read_images_text(path):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::ReadImagesText(const std::string& path)
        void Reconstruction::WriteImagesText(const std::string& path)
    """
    images = {}
    with open(path, "r") as fid:
        while True:
            line = fid.readline()
            if not line:
                break
            line = line.strip()
            if len(line) > 0 and line[0] != "#":
                elems = line.split()
                image_id = int(elems[0])
                qvec = np.array(tuple(map(float, elems[1:5])))
                tvec = np.array(tuple(map(float, elems[5:8])))
                camera_id = int(elems[8])
                image_name = elems[9]
                elems = fid.readline().split()
                xys = np.column_stack([tuple(map(float, elems[0::3])),
                                       tuple(map(float, elems[1::3]))])
                point3D_ids = np.array(tuple(map(int, elems[2::3])))
                images[image_id] = Image(
                    id=image_id, qvec=qvec, tvec=tvec,
                    camera_id=camera_id, name=image_name,
                    xys=xys, point3D_ids=point3D_ids)
    return images


def read_images_binary(path_to_model_file):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::ReadImagesBinary(const std::string& path)
        void Reconstruction::WriteImagesBinary(const std::string& path)
    """
    images = {}
    with open(path_to_model_file, "rb") as fid:
        num_reg_images = read_next_bytes(fid, 8, "Q")[0]
        for image_index in range(num_reg_images):
            binary_image_properties = read_next_bytes(
                fid, num_bytes=64, format_char_sequence="idddddddi")
            image_id = binary_image_properties[0]
            qvec = np.array(binary_image_properties[1:5])
            tvec = np.array(binary_image_properties[5:8])
            camera_id = binary_image_properties[8]
            image_name = ""
            current_char = read_next_bytes(fid, 1, "c")[0]
            while current_char != b"\x00":   # look for the ASCII 0 entry
                image_name += current_char.decode("utf-8")
                current_char = read_next_bytes(fid, 1, "c")[0]
            num_points2D = read_next_bytes(fid, num_bytes=8,
                                           format_char_sequence="Q")[0]
            x_y_id_s = read_next_bytes(fid, num_bytes=24*num_points2D,
                                       format_char_sequence="ddq"*num_points2D)
            xys = np.column_stack([tuple(map(float, x_y_id_s[0::3])),
                                   tuple(map(float, x_y_id_s[1::3]))])
            point3D_ids = np.array(tuple(map(int, x_y_id_s[2::3])))
            images[image_id] = Image(
                id=image_id, qvec=qvec, tvec=tvec,
                camera_id=camera_id, name=image_name,
                xys=xys, point3D_ids=point3D_ids)
    return images


def read_points3D_text(path):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::ReadPoints3DText(const std::string& path)
        void Reconstruction::WritePoints3DText(const std::string& path)
    """
    points3D = {}
    with open(path, "r") as fid:
        while True:
            line = fid.readline()
            if not line:
                break
            line = line.strip()
            if len(line) > 0 and line[0] != "#":
                elems = line.split()
                point3D_id = int(elems[0])
                xyz = np.array(tuple(map(float, elems[1:4])))
                rgb = np.array(tuple(map(int, elems[4:7])))
                error = float(elems[7])
                image_ids = np.array(tuple(map(int, elems[8::2])))
                point2D_idxs = np.array(tuple(map(int, elems[9::2])))
                points3D[point3D_id] = Point3D(id=point3D_id, xyz=xyz, rgb=rgb,
                                               error=error, image_ids=image_ids,
                                               point2D_idxs=point2D_idxs)
    return points3D


def read_points3d_binary(path_to_model_file):
    """
    see: src/base/reconstruction.cc
        void Reconstruction::ReadPoints3DBinary(const std::string& path)
        void Reconstruction::WritePoints3DBinary(const std::string& path)
    """
    points3D = {}
    with open(path_to_model_file, "rb") as fid:
        num_points = read_next_bytes(fid, 8, "Q")[0]
        for point_line_index in range(num_points):
            binary_point_line_properties = read_next_bytes(
                fid, num_bytes=43, format_char_sequence="QdddBBBd")
            point3D_id = binary_point_line_properties[0]
            xyz = np.array(binary_point_line_properties[1:4])
            rgb = np.array(binary_point_line_properties[4:7])
            error = np.array(binary_point_line_properties[7])
            track_length = read_next_bytes(
                fid, num_bytes=8, format_char_sequence="Q")[0]
            track_elems = read_next_bytes(
                fid, num_bytes=8*track_length,
                format_char_sequence="ii"*track_length)
            image_ids = np.array(tuple(map(int, track_elems[0::2])))
            point2D_idxs = np.array(tuple(map(int, track_elems[1::2])))
            points3D[point3D_id] = Point3D(
                id=point3D_id, xyz=xyz, rgb=rgb,
                error=error, image_ids=image_ids,
                point2D_idxs=point2D_idxs)
    return points3D


def read_model(path, ext):
    if ext == ".txt":
        cameras = read_cameras_text(os.path.join(path, "cameras" + ext))
        images = read_images_text(os.path.join(path, "images" + ext))
        max_id, id = read_images_text_id(os.path.join(path, "images" + ext))
        points3D = read_points3D_text(os.path.join(path, "points3D") + ext)
    else:
        cameras = read_cameras_binary(os.path.join(path, "cameras" + ext))
        images = read_images_binary(os.path.join(path, "images" + ext))
        points3D = read_points3d_binary(os.path.join(path, "points3D") + ext)
    return cameras, images, points3D, max_id, id


def qvec2rotmat(qvec):
    return np.array([
        [1 - 2 * qvec[2]**2 - 2 * qvec[3]**2,
         2 * qvec[1] * qvec[2] - 2 * qvec[0] * qvec[3],
         2 * qvec[3] * qvec[1] + 2 * qvec[0] * qvec[2]],
        [2 * qvec[1] * qvec[2] + 2 * qvec[0] * qvec[3],
         1 - 2 * qvec[1]**2 - 2 * qvec[3]**2,
         2 * qvec[2] * qvec[3] - 2 * qvec[0] * qvec[1]],
        [2 * qvec[3] * qvec[1] - 2 * qvec[0] * qvec[2],
         2 * qvec[2] * qvec[3] + 2 * qvec[0] * qvec[1],
         1 - 2 * qvec[1]**2 - 2 * qvec[2]**2]])


def rotmat2qvec(R):
    Rxx, Ryx, Rzx, Rxy, Ryy, Rzy, Rxz, Ryz, Rzz = R.flat
    K = np.array([
        [Rxx - Ryy - Rzz, 0, 0, 0],
        [Ryx + Rxy, Ryy - Rxx - Rzz, 0, 0],
        [Rzx + Rxz, Rzy + Ryz, Rzz - Rxx - Ryy, 0],
        [Ryz - Rzy, Rzx - Rxz, Rxy - Ryx, Rxx + Ryy + Rzz]]) / 3.0
    eigvals, eigvecs = np.linalg.eigh(K)
    qvec = eigvecs[[3, 0, 1, 2], np.argmax(eigvals)]
    if qvec[0] < 0:
        qvec *= -1
    return qvec
#============================ read_model.py ============================#


if __name__ == '__main__':
    start = time.time()
    parser = argparse.ArgumentParser(description='Convert colmap camera')

    parser.add_argument('--dense_folder', default='.', type=str, help='Project dir.')
    parser.add_argument('--list_folder', default='.', type=str, help='lists dir.')

    parser.add_argument('--max_d', type=int, default=0)
    parser.add_argument('--interval_scale', type=float, default=1)

    parser.add_argument('--theta0', type=float, default=5)
    parser.add_argument('--sigma1', type=float, default=1)
    parser.add_argument('--sigma2', type=float, default=10)

    parser.add_argument('--test', action='store_true', default=False, help='If set, do not write to file.')
    parser.add_argument('--convert_format', action='store_true', default=False, help='If set, convert image to jpg format.')

    args = parser.parse_args()

    image_dir = os.path.join(args.dense_folder, 'colmap/images') #resized img_dir
    model_dir = os.path.join(args.dense_folder, 'colmap/sparse') #colmap result dir
    cam_dir = os.path.join(args.dense_folder, 'cams')            #mvsnet cameras input dir
    renamed_dir = os.path.join(args.dense_folder, 'images_mvsnet') #indexed image dir for mvsnet input
    list_dir = args.list_folder   #write the model name to list

    name = args.dense_folder.split('/')[-1]

    with open(list_dir, 'w') as lists:
        lists.write(name)
    print('write lists:',args.dense_folder)

    cameras, images, points3d, max_id, id_valid = read_model(model_dir, '.txt')
    num_images = max_id
    print('id_valid:',id_valid)
    print('max_id:',max_id)
    param_type = {
        'SIMPLE_PINHOLE': ['f', 'cx', 'cy'],
        'PINHOLE': ['fx', 'fy', 'cx', 'cy'],
        'SIMPLE_RADIAL': ['f', 'cx', 'cy', 'k'],
        'SIMPLE_RADIAL_FISHEYE': ['f', 'cx', 'cy', 'k'],
        'RADIAL': ['f', 'cx', 'cy', 'k1', 'k2'],
        'RADIAL_FISHEYE': ['f', 'cx', 'cy', 'k1', 'k2'],
        'OPENCV': ['fx', 'fy', 'cx', 'cy', 'k1', 'k2', 'p1', 'p2'],
        'OPENCV_FISHEYE': ['fx', 'fy', 'cx', 'cy', 'k1', 'k2', 'k3', 'k4'],
        'FULL_OPENCV': ['fx', 'fy', 'cx', 'cy', 'k1', 'k2', 'p1', 'p2', 'k3', 'k4', 'k5', 'k6'],
        'FOV': ['fx', 'fy', 'cx', 'cy', 'omega'],
        'THIN_PRISM_FISHEYE': ['fx', 'fy', 'cx', 'cy', 'k1', 'k2', 'p1', 'p2', 'k3', 'k4', 'sx1', 'sy1']
    }

    # intrinsic
    intrinsic = {}
    for camera_id, cam in cameras.items():
        params_dict = {key: value for key, value in zip(param_type[cam.model], cam.params)}
        if 'f' in param_type[cam.model]:
            params_dict['fx'] = params_dict['f']
            params_dict['fy'] = params_dict['f']
        i = np.array([
            [params_dict['fx'], 0, params_dict['cx']],
            [0, params_dict['fy'], params_dict['cy']],
            [0, 0, 1]
        ])
        intrinsic[camera_id] = i

    # extrinsic
    extrinsic = {}
    for image_id, image in images.items():
        e = np.zeros((4, 4))
        e[:3, :3] = qvec2rotmat(image.qvec)
        e[:3, 3] = image.tvec
        e[3, 3] = 1
        extrinsic[image_id] = e

    #camera location
    camera_world_location = {}
    for image_id in range(num_images+1):
        if image_id in id_valid:
            R = extrinsic[image_id][:3,:3]
            T = extrinsic[image_id][:3,3]
            camera_world_location[image_id] = np.linalg.inv(R)@(-T)
    
    # depth range and interval
    depth_ranges = {}
    for i in range(num_images+1):
        zs1 = []
        zs = []
        if i not in id_valid:
            print('id_invalid:',i)
            continue
        if i in id_valid:
            #print('i:',i)
            
            for p3d_id in images[i].point3D_ids:
                #print('p3d_id:',p3d_id,i)
                if p3d_id == -1:
                    continue
                transformed = np.matmul(extrinsic[i], [points3d[p3d_id].xyz[0], points3d[p3d_id].xyz[1], points3d[p3d_id].xyz[2], 1])
                zs1.append(np.asscalar(transformed[2]))
            
            for j in id_valid:
                if i==j:
                    continue
                R = extrinsic[i][:3,:3]
                T = extrinsic[i][:3,3]
                transformed = R@camera_world_location[j]+T
                zs.append(np.asscalar(transformed[2]))

        zs_sorted1 = sorted(zs1)
        zs_sorted = sorted(zs)
        # relaxed depth range
        
        depth_min = zs_sorted1[int(len(zs1) * .01)]
        depth_max = zs_sorted1[int(len(zs1) * .99)]

        #depth_min = zs_sorted[0]
        #depth_max = zs_sorted[-1]
        #rint('depth_min_ori,depth_max_ori:',depth_min1,depth_max1)
        print('depth_min,depth_max:',depth_min,depth_max)
        # determine depth number by inverse depth setting, see supplementary material
        if args.max_d == 0:
            image_int = intrinsic[images[i].camera_id]
            image_ext = extrinsic[i]
            image_r = image_ext[0:3, 0:3]
            image_t = image_ext[0:3, 3]
            p1 = [image_int[0, 2], image_int[1, 2], 1]
            p2 = [image_int[0, 2] + 1, image_int[1, 2], 1]
            P1 = np.matmul(np.linalg.inv(image_int), p1) * depth_min
            P1 = np.matmul(np.linalg.inv(image_r), (P1 - image_t))
            P2 = np.matmul(np.linalg.inv(image_int), p2) * depth_min
            P2 = np.matmul(np.linalg.inv(image_r), (P2 - image_t))
            depth_num = (1 / depth_min - 1 / depth_max) / (1 / depth_min - 1 / (depth_min + np.linalg.norm(P2 - P1)))
        else:
            depth_num = args.max_d
        depth_interval = (depth_max - depth_min) / (depth_num - 1) / args.interval_scale
        depth_ranges[i] = (depth_min, depth_interval, depth_num, depth_max)

    # view selection
    score = np.zeros((num_images+1, num_images+1))
    queue = []
    for i in range(num_images+1):
        if i not in id_valid:
            continue
        for j in range(i + 1, num_images+1):
            if j not in id_valid:
                continue
            queue.append((i, j))
    def calc_score(inputs):
        #print('inputs:',inputs)
        i, j = inputs
        id_i = images[i].point3D_ids
        id_j = images[j].point3D_ids
        id_intersect = [it for it in id_i if it in id_j]
        cam_center_i = -np.matmul(extrinsic[i][:3, :3].transpose(), extrinsic[i][:3, 3:4])[:, 0]
        cam_center_j = -np.matmul(extrinsic[j][:3, :3].transpose(), extrinsic[j][:3, 3:4])[:, 0]
        score = 0
        for pid in id_intersect:
            if pid == -1:
                continue
            p = points3d[pid].xyz
            theta = (180 / np.pi) * np.arccos(np.dot(cam_center_i - p, cam_center_j - p) / np.linalg.norm(cam_center_i - p) / np.linalg.norm(cam_center_j - p))
            score += np.exp(-(theta - args.theta0) * (theta - args.theta0) / (2 * (args.sigma1 if theta <= args.theta0 else args.sigma2) ** 2))
        return i, j, score
    p = mp.Pool(processes=mp.cpu_count())
    result = p.map(calc_score, queue)
    for i, j, s in result:
        score[i, j] = s
        score[j, i] = s
    view_sel = []
    #id_sort = sorted(id_valid)
    for i in range(num_images+1):
        view_sel2 = []
        if i not in id_valid:
            continue
        sorted_score = np.argsort(score[i])[::-1]
        #print('score[i, k]:',i,sorted_score)
        #view_sel.append([(k, score[i, k]) for k in sorted_score[:10]])
        for k in sorted_score[:10]:
            if score[i, k]==0:
                continue
            view_sel2.append((k, score[i, k]))
        view_sel.append(view_sel2)

    os.makedirs(cam_dir, exist_ok = True)

    for i in range(num_images+1):
        if i not in id_valid:
            continue
        with open(os.path.join(cam_dir, '%08d_cam.txt' % i), 'w') as f:
            f.write('extrinsic\n')
            for j in range(4):
                for k in range(4):
                    f.write(str(extrinsic[i][j, k]) + ' ')
                f.write('\n')
            f.write('\nintrinsic\n')
            for j in range(3):
                for k in range(3):
                    f.write(str(intrinsic[images[i].camera_id][j, k]) + ' ')
                f.write('\n')
            f.write('\n%f %f %f %f\n' % (depth_ranges[i][0], depth_ranges[i][1], depth_ranges[i][2], depth_ranges[i][3]))
    with open(os.path.join(cam_dir, 'pair.txt'), 'w') as f:
        f.write('%d\n' % len(images))
        id_sort = sorted(id_valid)
        #print('id_sort:',len(id_sort),id_sort)
        for i, sorted_score in enumerate(view_sel):
            #print('score:',i,sorted_score)
            f.write('%d\n%d ' % (id_sort[i], len(sorted_score)))
            for image_id, s in sorted_score:
                f.write('%d %f ' % (image_id, s))
            f.write('\n')

    for i in range(num_images+1):
        if i not in id_valid:
            continue
        if args.convert_format:

            img = cv2.imread(os.path.join(image_dir, images[i].name))
            cv2.imwrite(os.path.join(renamed_dir, '%08d.png' % i), img)
        else:
            os.makedirs(renamed_dir, exist_ok = True)
            print('images[i].name:',images[i].name)
            print('i:',i)
            shutil.copyfile(os.path.join(image_dir, images[i].name), os.path.join(renamed_dir, '%08d.png' % i))
    end = time.time()
    print('time:',(end-start)/60)