From 105c419bf9688579216c6abd71da943d5698b01a Mon Sep 17 00:00:00 2001 From: Ryan Lim Date: Tue, 1 Oct 2024 13:06:57 -0400 Subject: [PATCH] fix subsample depth --- workflows/long-read-mngs/run.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl index e1ffb2a1..99a2f34d 100644 --- a/workflows/long-read-mngs/run.wdl +++ b/workflows/long-read-mngs/run.wdl @@ -1280,7 +1280,7 @@ workflow czid_long_read_mngs { String library_type = "RNA" String guppy_basecaller_setting = "hac" # fast, hac, super - Int subsample_depth = 4000000 # should be 4x the number of reads desired + Int subsample_depth = 1000000 File minimap_host_db File minimap_human_db