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Got an empty file with only the header #33

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zoelwl opened this issue Jun 28, 2022 · 3 comments
Open

Got an empty file with only the header #33

zoelwl opened this issue Jun 28, 2022 · 3 comments

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@zoelwl
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zoelwl commented Jun 28, 2022

Hi,
I used smetana to build an interactive feeding model of a community of 108 strains of bacteria, using the code below:
smetana *.xml -d -o model -m M9[-O2] --mediadb media_db.tsv
But i got an empty file with only the header.
model_detailed.xls
So I want to ask what went wrong in the middle? Is it that you replied to someone else's question: Is it necessary for a single strain to survive under a given medium to simulate the interaction feeding of the flora?
Look forward to hearing from you.
Thank you!

@wupeng1998
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Hello did you get your problem solved? I have built a colony model using macrogenomes via carvene, but using smetana to simulate colony interactions found null results.

@zoelwl
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zoelwl commented May 16, 2023

Maybe you can change your medium component.

@wupeng1998
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ok, i will try

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