comma_diagram.drawio.svg

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cluster pd--><polygon fill="#FFFFFF" filter="url(#f7d3zude2prkm)" points="372.5,524,398.5,524,405.5,546.2969,612.5,546.2969,612.5,607,372.5,607,372.5,524" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="372.5" x2="405.5" y1="546.2969" y2="546.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="20" x="376.5" y="538.9951">pd</text><!--MD5=[017fe6bc143c9ef60bb5af37eb87776a]
class pd.Series--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="32" id="pd.Series" style="stroke: #A80036; stroke-width: 1.5;" width="71" x="389" y="559"/><ellipse cx="404" cy="575" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M406.9688,580.6406 Q406.3906,580.9375 405.75,581.0781 Q405.1094,581.2344 404.4063,581.2344 Q401.9063,581.2344 400.5781,579.5938 Q399.2656,577.9375 399.2656,574.8125 Q399.2656,571.6875 400.5781,570.0313 Q401.9063,568.375 404.4063,568.375 Q405.1094,568.375 405.75,568.5313 Q406.4063,568.6875 406.9688,568.9844 L406.9688,571.7031 Q406.3438,571.125 405.75,570.8594 Q405.1563,570.5781 404.5313,570.5781 Q403.1875,570.5781 402.5,571.6563 Q401.8125,572.7188 401.8125,574.8125 Q401.8125,576.9063 402.5,577.9844 Q403.1875,579.0469 404.5313,579.0469 Q405.1563,579.0469 405.75,578.7813 Q406.3438,578.5 406.9688,577.9219 L406.9688,580.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="39" x="418" y="579.1543">Series</text><!--MD5=[f99c4367c453e5fe9db9cf62c28422b8]
class pd.DataFrame--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="32" id="pd.DataFrame" style="stroke: #A80036; stroke-width: 1.5;" width="101" x="495" y="559"/><ellipse cx="510" cy="575" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M512.9688,580.6406 Q512.3906,580.9375 511.75,581.0781 Q511.1094,581.2344 510.4063,581.2344 Q507.9063,581.2344 506.5781,579.5938 Q505.2656,577.9375 505.2656,574.8125 Q505.2656,571.6875 506.5781,570.0313 Q507.9063,568.375 510.4063,568.375 Q511.1094,568.375 511.75,568.5313 Q512.4063,568.6875 512.9688,568.9844 L512.9688,571.7031 Q512.3438,571.125 511.75,570.8594 Q511.1563,570.5781 510.5313,570.5781 Q509.1875,570.5781 508.5,571.6563 Q507.8125,572.7188 507.8125,574.8125 Q507.8125,576.9063 508.5,577.9844 Q509.1875,579.0469 510.5313,579.0469 Q511.1563,579.0469 511.75,578.7813 Q512.3438,578.5 512.9688,577.9219 L512.9688,580.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="69" x="524" y="579.1543">DataFrame</text><!--MD5=[9c462d0aa0befb1e0018a76078e1bb9f]
class __init___py--><rect fill="#8FBC8F" filter="url(#f7d3zude2prkm)" height="37.9375" id="__init___py" style="stroke: #A80036; stroke-width: 1.5;" width="95" x="6" y="25"/><ellipse cx="21" cy="43.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M16.7188,37.5781 L19.6406,37.5781 L21.1094,43.0156 L22.5781,37.5781 L25.5156,37.5781 L25.5156,49.9688 L23.4063,49.9688 L23.4063,40.0469 L22.0938,45.4688 L20.1563,45.4688 L18.8281,40.0469 L18.8281,49.9688 L16.7188,49.9688 L16.7188,37.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="36.5" y="41.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="63" x="35" y="55.1074">__init___py</text><!--MD5=[61511f38d1f2cbd915a3e933561a1607]
class Hypothesis--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="265.6797" id="Hypothesis" style="stroke: #A80036; stroke-width: 1.5;" width="203" x="103" y="176"/><ellipse cx="165.75" cy="192" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M168.7188,197.6406 Q168.1406,197.9375 167.5,198.0781 Q166.8594,198.2344 166.1563,198.2344 Q163.6563,198.2344 162.3281,196.5938 Q161.0156,194.9375 161.0156,191.8125 Q161.0156,188.6875 162.3281,187.0313 Q163.6563,185.375 166.1563,185.375 Q166.8594,185.375 167.5,185.5313 Q168.1563,185.6875 168.7188,185.9844 L168.7188,188.7031 Q168.0938,188.125 167.5,187.8594 Q166.9063,187.5781 166.2813,187.5781 Q164.9375,187.5781 164.25,188.6563 Q163.5625,189.7188 163.5625,191.8125 Q163.5625,193.9063 164.25,194.9844 Q164.9375,196.0469 166.2813,196.0469 Q166.9063,196.0469 167.5,195.7813 Q168.0938,195.5 168.7188,194.9219 L168.7188,197.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="69" x="186.25" y="196.1543">Hypothesis</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="104" x2="305" y1="208" y2="208"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="53" x="109" y="222.2104">RIVM_URL</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="104" x="109" y="235.0151">_required_params</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="114" x="109" y="247.8198">all_possible_actions</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="121" x="109" y="260.6245">all_possible_features</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="95" x="109" y="273.4292">individual_status</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="101" x="109" y="286.2339">lockdown_policies</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="104" x2="305" y1="292.8281" y2="292.8281"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="191" x="109" y="307.0386">_get_one_hot_encoded_features()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="109" y="319.8433">adjust_cases()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="130" x="109" y="332.6479">compute_time_period()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="157" x="109" y="345.4526">create_empty_hypotheses()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="72" x="109" y="358.2573">filter_dates()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="92" x="109" y="371.062">get_covid_data()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="87" x="109" y="383.8667">get_file_paths()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="116" x="109" y="396.6714">get_positive_cases()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="106" x="109" y="409.4761">read_hypotheses()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="160" x="109" y="422.2808">scale_cases_to_population()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="118" x="109" y="435.0854">validate_param_file()</text><!--MD5=[b5c4998e23cc2bc43d4c51549e9a1fdc]
class hypothesis_py--><rect fill="#8FBC8F" filter="url(#f7d3zude2prkm)" height="71.5469" id="hypothesis_py" style="stroke: #A80036; stroke-width: 1.5;" width="136" x="136.5" y="8"/><ellipse cx="158.7" cy="26.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M154.4188,20.5781 L157.3406,20.5781 L158.8094,26.0156 L160.2781,20.5781 L163.2156,20.5781 L163.2156,32.9688 L161.1063,32.9688 L161.1063,23.0469 L159.7938,28.4688 L157.8563,28.4688 L156.5281,23.0469 L156.5281,32.9688 L154.4188,32.9688 L154.4188,20.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="188.3" y="24.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="88" x="174.3" y="38.1074">hypothesis_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="137.5" x2="271.5" y1="45.9375" y2="45.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="112" x="142.5" y="60.1479">PARAMS_INDIVIDUAL</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="124" x="142.5" y="72.9526">PARAMS_IPF_WEIGHTS</text><!--MD5=[3ada0b1ccda01f6af47785107eed7eb1]
class Individual--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="304.0938" id="Individual" style="stroke: #A80036; stroke-width: 1.5;" width="186" x="370.5" y="157"/><ellipse cx="430.25" cy="173" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M433.2188,178.6406 Q432.6406,178.9375 432,179.0781 Q431.3594,179.2344 430.6563,179.2344 Q428.1563,179.2344 426.8281,177.5938 Q425.5156,175.9375 425.5156,172.8125 Q425.5156,169.6875 426.8281,168.0313 Q428.1563,166.375 430.6563,166.375 Q431.3594,166.375 432,166.5313 Q432.6563,166.6875 433.2188,166.9844 L433.2188,169.7031 Q432.5938,169.125 432,168.8594 Q431.4063,168.5781 430.7813,168.5781 Q429.4375,168.5781 428.75,169.6563 Q428.0625,170.7188 428.0625,172.8125 Q428.0625,174.9063 428.75,175.9844 Q429.4375,177.0469 430.7813,177.0469 Q431.4063,177.0469 432,176.7813 Q432.5938,176.5 433.2188,175.9219 L433.2188,178.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="58" x="450.75" y="177.1543">Individual</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="371.5" x2="555.5" y1="189" y2="189"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="54" x="376.5" y="203.2104">_features</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="376.5" y="216.0151">_status</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="376.5" y="228.8198">actions</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="88" x="376.5" y="241.6245">chosen_actions</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="71" x="376.5" y="254.4292">covid_status</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="113" x="376.5" y="267.2339">days_since_positive</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="65" x="376.5" y="280.0386">dir_params</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="10" x="376.5" y="292.8433">id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="376.5" y="305.6479">recovery</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="371.5" x2="555.5" y1="312.2422" y2="312.2422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="376.5" y="326.4526">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="174" x="376.5" y="339.2573">choose_actions_on_lockdown()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="73" x="376.5" y="352.062">get_actions()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="376.5" y="364.8667">get_features()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="376.5" y="377.6714">get_status()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="81" x="376.5" y="390.4761">is_recovered()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="171" x="376.5" y="403.2808">modify_policy_when_infected()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="57" x="376.5" y="416.0854">populate()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="77" x="376.5" y="428.8901">populate_ipf()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="113" x="376.5" y="441.6948">sampling_from_ipf()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="79" x="376.5" y="454.4995">take_actions()</text><!--MD5=[8a9a4ef89bf67ce4e68f8c9631c8a484]
class individual_py--><rect fill="#8FBC8F" filter="url(#f7d3zude2prkm)" height="37.9375" id="individual_py" style="stroke: #A80036; stroke-width: 1.5;" width="110" x="408.5" y="25"/><ellipse cx="423.5" cy="43.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M419.2188,37.5781 L422.1406,37.5781 L423.6094,43.0156 L425.0781,37.5781 L428.0156,37.5781 L428.0156,49.9688 L425.9063,49.9688 L425.9063,40.0469 L424.5938,45.4688 L422.6563,45.4688 L421.3281,40.0469 L421.3281,49.9688 L419.2188,49.9688 L419.2188,37.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="446.5" y="41.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="78" x="437.5" y="55.1074">individual_py</text><!--MD5=[7e20e022571e30ec1001cf6eabd7f3e2]
class Model--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="252.875" id="Model" style="stroke: #A80036; stroke-width: 1.5;" width="167" x="842" y="182.5"/><ellipse cx="902.75" cy="198.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M905.7188,204.1406 Q905.1406,204.4375 904.5,204.5781 Q903.8594,204.7344 903.1563,204.7344 Q900.6563,204.7344 899.3281,203.0938 Q898.0156,201.4375 898.0156,198.3125 Q898.0156,195.1875 899.3281,193.5313 Q900.6563,191.875 903.1563,191.875 Q903.8594,191.875 904.5,192.0313 Q905.1563,192.1875 905.7188,192.4844 L905.7188,195.2031 Q905.0938,194.625 904.5,194.3594 Q903.9063,194.0781 903.2813,194.0781 Q901.9375,194.0781 901.25,195.1563 Q900.5625,196.2188 900.5625,198.3125 Q900.5625,200.4063 901.25,201.4844 Q901.9375,202.5469 903.2813,202.5469 Q903.9063,202.5469 904.5,202.2813 Q905.0938,202 905.7188,201.4219 L905.7188,204.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="37" x="923.25" y="202.6543">Model</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="843" x2="1008" y1="214.5" y2="214.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="848" y="228.7104">agents</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="103" x="848" y="241.5151">cumulative_status</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="72" x="848" y="254.3198">current_step</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="69" x="848" y="267.1245">date_format</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="65" x="848" y="279.9292">dir_params</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="94" x="848" y="292.7339">lockdown_status</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="19" x="848" y="305.5386">rng</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="848" y="318.3433">simulation_id</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="843" x2="1008" y1="324.9375" y2="324.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="848" y="339.1479">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="155" x="848" y="351.9526">get_recovered_individuals()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="43" x="848" y="364.7573">report()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="27" x="848" y="377.562">run()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="40" x="848" y="390.3667">setup()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="33" x="848" y="403.1714">step()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="47" x="848" y="415.9761">update()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="131" x="848" y="428.7808">update_covid_counter()</text><!--MD5=[ce0bdc9c9d7363fc59409c686ba93793]
class list--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="32" id="list" style="stroke: #A80036; stroke-width: 1.5;" width="50" x="970.5" y="559"/><ellipse cx="985.5" cy="575" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M988.4688,580.6406 Q987.8906,580.9375 987.25,581.0781 Q986.6094,581.2344 985.9063,581.2344 Q983.4063,581.2344 982.0781,579.5938 Q980.7656,577.9375 980.7656,574.8125 Q980.7656,571.6875 982.0781,570.0313 Q983.4063,568.375 985.9063,568.375 Q986.6094,568.375 987.25,568.5313 Q987.9063,568.6875 988.4688,568.9844 L988.4688,571.7031 Q987.8438,571.125 987.25,570.8594 Q986.6563,570.5781 986.0313,570.5781 Q984.6875,570.5781 984,571.6563 Q983.3125,572.7188 983.3125,574.8125 Q983.3125,576.9063 984,577.9844 Q984.6875,579.0469 986.0313,579.0469 Q986.6563,579.0469 987.25,578.7813 Q987.8438,578.5 988.4688,577.9219 L988.4688,580.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="18" x="999.5" y="579.1543">list</text><!--MD5=[ec9e782bad779c53622ae0851576a95f]
class dict--><rect fill="#FEFECE" filter="url(#f7d3zude2prkm)" height="32" id="dict" style="stroke: #A80036; stroke-width: 1.5;" width="55" x="1127" y="559"/><ellipse cx="1142" cy="575" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1144.9688,580.6406 Q1144.3906,580.9375 1143.75,581.0781 Q1143.1094,581.2344 1142.4063,581.2344 Q1139.9063,581.2344 1138.5781,579.5938 Q1137.2656,577.9375 1137.2656,574.8125 Q1137.2656,571.6875 1138.5781,570.0313 Q1139.9063,568.375 1142.4063,568.375 Q1143.1094,568.375 1143.75,568.5313 Q1144.4063,568.6875 1144.9688,568.9844 L1144.9688,571.7031 Q1144.3438,571.125 1143.75,570.8594 Q1143.1563,570.5781 1142.5313,570.5781 Q1141.1875,570.5781 1140.5,571.6563 Q1139.8125,572.7188 1139.8125,574.8125 Q1139.8125,576.9063 1140.5,577.9844 Q1141.1875,579.0469 1142.5313,579.0469 Q1143.1563,579.0469 1143.75,578.7813 Q1144.3438,578.5 1144.9688,577.9219 L1144.9688,580.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="23" x="1156" y="579.1543">dict</text><!--MD5=[b79685a4a12ba44cf8ecde1af12801e7]
class model_py--><rect fill="#8FBC8F" filter="url(#f7d3zude2prkm)" height="37.9375" id="model_py" style="stroke: #A80036; stroke-width: 1.5;" width="90" x="880.5" y="25"/><ellipse cx="895.5" cy="43.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M891.2188,37.5781 L894.1406,37.5781 L895.6094,43.0156 L897.0781,37.5781 L900.0156,37.5781 L900.0156,49.9688 L897.9063,49.9688 L897.9063,40.0469 L896.5938,45.4688 L894.6563,45.4688 L893.3281,40.0469 L893.3281,49.9688 L891.2188,49.9688 L891.2188,37.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="908.5" y="41.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="58" x="909.5" y="55.1074">model_py</text><!--MD5=[d4916a5054d422d375e14fec76a18dd1]
link Hypothesis to pd.Series--><path d="M202.86,442 C207.93,465.96 217.03,489.26 232.5,508 C269.77,553.15 339.5,567.5 383.88,572 " fill="none" id="Hypothesis-&gt;pd.Series" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="388.9,572.48,380.3165,567.6505,383.9222,572.0093,379.5634,575.615,388.9,572.48" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="129" x="233.5" y="504.0669">daily_positive_cases</text><!--MD5=[93e128c7c612f29f50796958e3ef4d51]
link hypothesis_py to Hypothesis--><path d="M204.5,80.2 C204.5,105.18 204.5,140.43 204.5,175.76 " fill="none" id="hypothesis_py-Hypothesis" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="205.5" y="123.0669">contains</text><polygon fill="#000000" points="228,132.1328,231,138.1328,234,132.1328,228,132.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[959b70aadfba4cbc33e74ab7aad0cf55]
link Individual to pd.Series--><path d="M377.5705,472.559 C377.5705,472.559 373.86,485.26 372.5,491 C367.35,512.72 381.15,533.98 395.82,549.55 " fill="none" id="Individual-pd.Series" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="405.4,558.91,401.7576,549.7594,401.8235,555.4159,396.167,555.4818,405.4,558.91" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="401.8235" x2="396.1" y1="555.4159" y2="549.825"/><polygon fill="#A80036" points="381.29,461.15,375.6273,465.6147,377.5705,472.559,383.2333,468.0943,381.29,461.15" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="46" x="373.5" y="504.0669">actions</text><!--MD5=[52a7e7d81ec3eae634c00c2501b4118e]
link Individual to pd.DataFrame--><path d="M546.61,461.11 C550.1,471.05 553.12,481.06 555.5,491 C560.56,512.11 556.29,536.87 551.87,553.82 " fill="none" id="Individual-&gt;pd.DataFrame" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="550.51,558.82,556.739,551.1912,551.8268,553.9965,549.0214,549.0843,550.51,558.82" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="58" x="558.5" y="504.0669">lockdown</text><!--MD5=[52a7e7d81ec3eae634c00c2501b4118e]
link Individual to pd.DataFrame--><path d="M438.28,461.04 C441.12,477.82 446.79,493.91 456.5,508 C462.17,516.22 468.91,510.91 477.5,516 C495.77,526.83 513.93,542.65 526.89,555.04 " fill="none" id="Individual-&gt;pd.DataFrame-1" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="530.74,558.76,527.0561,549.6261,527.1477,555.2822,521.4916,555.3738,530.74,558.76" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="89" x="457.5" y="504.0669">action_effects</text><!--MD5=[e8ab0ae35aac05ea99b07d53dddf04d8]
link individual_py to Individual--><path d="M463.5,63.08 C463.5,83.56 463.5,119.03 463.5,156.71 " fill="none" id="individual_py-Individual" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="464.5" y="123.0669">contains</text><polygon fill="#000000" points="487,132.1328,490,138.1328,493,132.1328,487,132.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[3d8e90d1819da45044700898ac62b392]
link Model to list--><path d="M1013.5253,446.5817 C1013.5253,446.5817 1025.61,476.43 1029.5,491 C1034.71,510.54 1025.88,531.62 1015.92,547.65 " fill="none" id="Model-list" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1008.29,558.81,1016.6694,553.6346,1011.1103,554.6813,1010.0635,549.1221,1008.29,558.81" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1011.1103" x2="1015.625" y1="554.6813" y2="548.075"/><polygon fill="#A80036" points="1008.51,435.68,1007.3838,442.8026,1013.5253,446.5817,1014.6515,439.4591,1008.51,435.68" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="44" x="1031.5" y="504.0669">agents</text><!--MD5=[3d8e90d1819da45044700898ac62b392]
link Model to list--><path d="M903.82,435.74 C904.26,460.53 908.26,485.73 918.5,508 C928.27,529.23 948.61,546.19 965.93,557.6 " fill="none" id="Model-&gt;list" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="970.26,560.38,964.8524,552.1485,966.0541,557.6762,960.5264,558.8779,970.26,560.38" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="101" x="919.5" y="504.0669">lockdown_policy</text><!--MD5=[ed7783636853499e89f89b40052fb402]
link Model to dict--><path d="M1017.1298,413.5754 C1017.1298,413.5754 1063.06,466.09 1084.5,491 C1101.14,510.34 1119.76,532.43 1133.6,548.96 " fill="none" id="Model-dict" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1141.94,558.93,1139.2326,549.4606,1138.7315,555.0952,1133.0969,554.5942,1141.94,558.93" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1138.7315" x2="1133.6" y1="555.0952" y2="548.96"/><polygon fill="#A80036" points="1009.21,404.56,1010.1648,411.7076,1017.1298,413.5754,1016.175,406.4278,1009.21,404.56" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="105" x="1098.5" y="504.0669">lockdown_status</text><!--MD5=[ebffcf67c695f4725b055ee26230b4d3]
link Model to pd.DataFrame--><path d="M841.64,368.26 C755.37,428.2 626.11,518 571.42,555.99 " fill="none" id="Model-&gt;pd.DataFrame" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="567.3,558.86,576.9709,556.9961,571.4022,556.0013,572.397,550.4326,567.3,558.86" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="58" x="658.5" y="504.0669">lockdown</text><!--MD5=[ebffcf67c695f4725b055ee26230b4d3]
link Model to pd.DataFrame--><path d="M841.85,408.97 C808.46,443.87 767.88,481.08 725.5,508 C687.05,532.42 638.27,549.6 601.19,560.29 " fill="none" id="Model-&gt;pd.DataFrame-1" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="596.27,561.69,606.0215,563.0713,601.0787,560.3202,603.8298,555.3773,596.27,561.69" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="89" x="744.5" y="504.0669">action_effects</text><!--MD5=[2ab219b8cc672623079eb9cfd94ca050]
link model_py to Model--><path d="M925.5,63.08 C925.5,88.14 925.5,135.65 925.5,182.2 " fill="none" id="model_py-Model" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="926.5" y="123.0669">contains</text><polygon fill="#000000" points="949,132.1328,952,138.1328,955,132.1328,949,132.1328" style="stroke: #000000; stroke-width: 1.0;"/><text fill="#888888" font-family="sans-serif" font-size="10" lengthAdjust="spacingAndGlyphs" textLength="188" x="517.5" y="642.2822">Generated by GitUml www.gituml.com</text><!--MD5=[babb2bb61d500310d072d0b96ef935f5]
@startuml
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class Hypothesis {
    RIVM_URL
    _required_params
    all_possible_actions
    all_possible_features
    individual_status
    lockdown_policies
    _get_one_hot_encoded_features()
    adjust_cases()
    compute_time_period()
    create_empty_hypotheses()
    filter_dates()
    get_covid_data()
    get_file_paths()
    get_positive_cases()
    read_hypotheses()
    scale_cases_to_population()
    validate_param_file()
}

Hypothesis ..> pd.Series : daily_positive_cases
class hypothesis_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    PARAMS_INDIVIDUAL
    PARAMS_IPF_WEIGHTS
}

hypothesis_py .. Hypothesis : contains >
class Individual {
    _features
    _status
    actions
    chosen_actions
    covid_status
    days_since_positive
    dir_params
    id
    recovery
    __init__()
    choose_actions_on_lockdown()
    get_actions()
    get_features()
    get_status()
    is_recovered()
    modify_policy_when_infected()
    populate()
    populate_ipf()
    sampling_from_ipf()
    take_actions()
}

Individual *- -> pd.Series : actions
Individual ..> pd.DataFrame : lockdown
Individual ..> pd.DataFrame : action_effects
class individual_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

individual_py .. Individual : contains >
class Model {
    agents
    cumulative_status
    current_step
    date_format
    dir_params
    lockdown_status
    rng
    simulation_id
    __init__()
    get_recovered_individuals()
    report()
    run()
    setup()
    step()
    update()
    update_covid_counter()
}

Model *- -> list : agents
Model *- -> dict : lockdown_status
Model ..> pd.DataFrame : lockdown
Model ..> pd.DataFrame : action_effects
Model ..> list : lockdown_policy
class model_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

model_py .. Model : contains >
center footer Generated by GitUml www.gituml.com
hide empty members
@enduml

PlantUML version 1.2020.08(Sun Apr 26 14:08:22 UTC 2020)
(GPL source distribution)
Java Runtime: OpenJDK Runtime Environment
JVM: OpenJDK 64-Bit Server VM
Java Version: 1.8.0_382-heroku-b05
Operating System: Linux
Default Encoding: UTF-8
Language: en
Country: US
--></g></svg>