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Snakemake has Flux support #2

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ocaisa opened this issue Apr 22, 2023 · 1 comment
Open

Snakemake has Flux support #2

ocaisa opened this issue Apr 22, 2023 · 1 comment

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@ocaisa
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ocaisa commented Apr 22, 2023

One recurring complaint about snakemake is that it can overwhelm the scheduler if you are not careful. This is just to document that snakemake has support for Flux which means you can, for example, take a large allocation from Slurm and then run flux inside your allocation (so you end up with your own scheduler, and a single job in the system queue).

I'm not saying we should use this, but it has a lot of value to know it is possible!

@ocaisa ocaisa changed the title Snake make has Flux support Snakemake has Flux support Apr 22, 2023
@tkphd
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tkphd commented Apr 28, 2023

Shiny!

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