_quarto.yml

# This is the website configuration file 
# For training developers:
#  Please do not edit this file
#  Contact us if something doesn't look right on your rendered website

project:
  type: book
  output-dir: _site
  render:
    - index.md
    - setup.md
    - materials.md
    - materials/*
    - "!materials/*/no_render"

format: courseformat-html

filters:
  - courseformat

execute:
  freeze: auto

knitr:
  opts_knit:
    cache.path: .knitr_cache

metadata-files:
  - "materials/_chapters.yml"
  # - "materials/_sidebar.yml"

book:
  search:
    location: sidebar
  favicon: "_extensions/cambiotraining/courseformat/img/university-of-cambridge-favicon.ico"
  bread-crumbs: false
  page-navigation: true
  # body-header: | 
  #   <div class="callout-caution">
  #   These materials are still under development
  #   </div>
  page-footer: 
    center: |
      Licensed [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) 
      ![](https://creativecommons.org/images/deed/cc_icon_black_x2.png){width=25px} 
      Bioinformatics Training Facility
  navbar:
    pinned: true
    logo: "_extensions/cambiotraining/courseformat/img/university_crest_reversed.png"
    left: 
      - text: Slides
        href: https://docs.google.com/presentation/d/17xzb0caD0Rf9h6eYmP1cj45ZMTnVKQEPh8vhSNkqHJo/edit?usp=sharing
    right:
      - icon: github
        href: https://github.com/cambiotraining/bioinformatics-software-pipelines
        aria-label: Bioinformatics Training Facility GitHub
      - icon: twitter
        href: https://twitter.com/bioinfocambs
        aria-label: Bioinformatics Training Facility Twitter
    title: "Managing Bioinformatics Software and Pipelines"
  chapters:
    - part: "Welcome"
      chapters:
        - text: "Introduction"
          href: index.md
        - text: "Data & Setup"
          href: setup.md