test_and_deploy.yml

name: tests

on:
  push:
    branches:
      - "main"
    tags:
      - 'v*'
  pull_request:
  schedule:
  # Runs at 6:10am UTC on Monday
    - cron: '10 6 * * 1'
  workflow_dispatch:

jobs:
  linting:
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/lint@v2

  manifest:
    name: Check Manifest
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/check_manifest@v2

  test:
    needs: [linting, manifest]
    name: ${{ matrix.os }} py${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        # Run all supported Python versions on linux
        os: [ubuntu-latest]
        python-version: ["3.10", "3.11", "3.12"]
        # Include one windows and two macOS (intel based and arm based) runs
        include:
          - os: macos-13
            python-version: "3.12"
          - os: macos-latest
            python-version: "3.12"
          - os: windows-latest
            python-version: "3.12"

    steps:
      - name: Cache brainglobe directory
        uses: actions/cache@v3
        with:
          path: | # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually
            ~/.brainglobe
            !~/.brainglobe/atlas.tar.gz
          key: bg-atlases
      - name: install HDF5 libs on ARM Mac
        if: matrix.os == 'macos-latest'
        run: brew install hdf5
      # Setup pyqt libraries
      - uses: tlambert03/setup-qt-libs@v1
      # Helps set up VTK with a headless display
      - uses: pyvista/setup-headless-display-action@v3
      # Run tests
      - uses: neuroinformatics-unit/actions/test@v2
        with:
          python-version: ${{ matrix.python-version }}
          secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}
          use-xvfb: true


      - name: Notify slack on scheduled failure
        if: failure() && github.event_name == 'schedule'
        uses: ravsamhq/notify-slack-action@v2
        with:
          status: ${{ job.status }} # required
          notify_when: 'failure'
        env:
          SLACK_WEBHOOK_URL: ${{ secrets.SLACK_NOTIFYBOT_WEBHOOK_URL }} # required


  build_sdist_wheels:
    name: Build source distribution
    needs: [test]
    if: github.event_name == 'push' && github.ref_type == 'tag'
    runs-on: ubuntu-latest
    steps:
    - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2


  upload_all:
    name: Publish build distributions
    needs: [build_sdist_wheels]
    if: github.event_name == 'push' && github.ref_type == 'tag'
    runs-on: ubuntu-latest
    steps:
    - uses: actions/download-artifact@v4
      with:
        name: artifact
        path: dist
    - uses: pypa/gh-action-pypi-publish@v1.12.3
      with:
        user: __token__
        password: ${{ secrets.TWINE_API_KEY }}