You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I have installed transrate and I managed to run the assembly evaluation with no problems.
However, when I try to make a run including fastq files, i get this error:
[DEPRECATION] The trollop gem has been renamed to optimist and will no longer be supported. Please switch to optimist as soon as possible.
/Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/bin/transrate:13:in `raise': bindeps config for snap doesn't contain an entry for 32bit (Bindeps::UnsupportedSystemError)
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:103:in `choose_url'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:77:in `initialize'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:47:in `new'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:47:in `block (3 levels) in missing'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:44:in `each_pair'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:44:in `block (2 levels) in missing'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:43:in `chdir'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:43:in `block in missing'
from /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/tmpdir.rb:93:in `mktmpdir'
from /Library/Ruby/Gems/2.6.0/gems/bindeps-1.2.1/lib/bindeps.rb:42:in `missing'
from /Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/lib/transrate/cmdline.rb:254:in `check_dependencies'
from /Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/lib/transrate/cmdline.rb:163:in `check_arguments'
from /Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/lib/transrate/cmdline.rb:17:in `initialize'
from /Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/bin/transrate:22:in `new'
from /Library/Ruby/Gems/2.6.0/gems/transrate-1.0.1/bin/transrate:22:in `<top (required)>'
from /usr/local/bin/transrate:23:in `load'
from /usr/local/bin/transrate:23:in `<main>'
I also get the [DEPRECATION] warning when i ran the assembly evaluation from a fasta file, but that works nicely.
How can I solve this?
The text was updated successfully, but these errors were encountered:
Gruxxis
changed the title
Transrate FASTQ base run not working
Transrate FASTQ based run not working
Dec 7, 2023
Hi,
I have installed transrate and I managed to run the assembly evaluation with no problems.
However, when I try to make a run including fastq files, i get this error:
I also get the [DEPRECATION] warning when i ran the assembly evaluation from a fasta file, but that works nicely.
How can I solve this?
The text was updated successfully, but these errors were encountered: