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tpm, eff_count, and coverage all zero in contigs.csv #229

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matthewabirk opened this issue May 7, 2019 · 1 comment
Open

tpm, eff_count, and coverage all zero in contigs.csv #229

matthewabirk opened this issue May 7, 2019 · 1 comment

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@matthewabirk
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matthewabirk commented May 7, 2019 •
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Has anyone else had an issue of the tpm, eff_count, and coverage being zero for all your contigs in the contigs.csv file?

I suspect this is due to the salmon.log containing an error:

The alignment group queue pool has been exhausted.  0 extra fragments were allocated on the heap to saturate the pool.  No new fragments will be allocated

The snap.log seems fine.
@theagessler
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I have this same problem. Is there a fix for this?

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@matthewabirk @theagessler