From 0402c04c6bdac2ab9806e9bc26f49915f552c5fa Mon Sep 17 00:00:00 2001 From: ZeMing Gong <67206894+zmgong@users.noreply.github.com> Date: Tue, 6 Aug 2024 21:08:02 -0700 Subject: [PATCH] Update README.md --- README.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 88d0125..25b15bd 100644 --- a/README.md +++ b/README.md @@ -86,12 +86,11 @@ mkdir -p data/BIOSCAN_5M/split_data cd data/BIOSCAN_5M wget https://aspis.cmpt.sfu.ca/projects/bioscan/BIOSCAN_CLIP_for_downloading/BIOSCAN_5M.hdf5 ``` -### Download data for generating hdf5 files +For more information about the hdf5 files, please check [Link](https://github.com/3dlg-hcvc/bioscan-clip/blob/main/DATA.md) -TODO: provide instructions on how to generate hdf5 files and explain what input is needed to generate the hdf5 files. -TODO: add the command for downloading the images and generating the hdf5 file. +### Download data for generating hdf5 files -You can check [BIOSCAN-1M](https://github.com/zahrag/BIOSCAN-1M) and [BIOSCAN-5M](https://github.com/zahrag/BIOSCAN-5M) to download tsv files. +You can check [BIOSCAN-1M](https://github.com/zahrag/BIOSCAN-1M) and [BIOSCAN-5M](https://github.com/zahrag/BIOSCAN-5M) to download tsv files. But they are actually not necessary. # Running experiments We recommend the use of [weights and biases](https://wandb.ai/site) to track and log experiments