From 3565e25a04ddf8622461c169cd8a102341005631 Mon Sep 17 00:00:00 2001 From: Ashley Sawle Date: Thu, 31 Oct 2024 11:29:26 +0000 Subject: [PATCH] Fix formatting --- Full_Course_Index.md | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/Full_Course_Index.md b/Full_Course_Index.md index 14e48ff..78f2853 100644 --- a/Full_Course_Index.md +++ b/Full_Course_Index.md @@ -30,8 +30,8 @@ differential expression analysis of RNA-seq data. * Session 1 - [Introduction to RNAseq Methods](Markdowns/01_Introduction_to_RNAseq_Methods.html) -* Session 2 - [Raw read file format and QC](Markdowns/02_FastQC_introduction.html) - - [Practical](Markdowns/02_FastQC_practical.html) +* Session 2 - [Raw read file format and QC](Markdowns/02_FastQC_introduction.html) + - [Practical](Markdowns/02_FastQC_practical.html) - [Practical solutions](Markdowns/02_FastQC_solutions.html) * Session 3 - [Alignment and Quantification of Gene Expression with Salmon](Markdowns/03_Quantification_with_Salmon_introduction.html) @@ -49,25 +49,28 @@ differential expression analysis of RNA-seq data. - [Practical solutions](Markdowns/05_Data_Exploration_solutions.html) ([pdf](Markdowns/05_Data_Exploration_solutions.pdf)) -* Session 6 - Statistical analysis of RNAseq data in R - - [Introduction to RNAseq Analysis in R](Markdowns/06_Introduction_to_RNAseq_Analysis_in_R.html) +* Session 6 - [Introduction to RNAseq Analysis in R](Markdowns/06_Introduction_to_RNAseq_Analysis_in_R.html) + +* Session 7 - Statistical analysis of RNAseq data - [Statistical Analysis of Bulk RNAseq Data](additional_scripts_and_materials/RNA-seq_stats.pdf) - [Linear Models in R and DESeq2 (Slides)](additional_scripts_and_materials/Statistical_models_in_R_DESeq2.pdf) - [Linear Models in R and DESeq2 (Worksheet)](Markdowns/07_Linear_Models.html) ([pdf](Markdowns/07_Linear_Models.pdf)) + +* Session 8 - Differential Expression Analysis with DESeq2 - [Practical - Differential Expression for RNA-seq](Markdowns/08_DE_analysis_with_DESeq2.html) ([pdf](Markdowns/08_DE_analysis_with_DESeq2.pdf)) - [practical solutions](Markdowns/08_DE_analysis_with_DESeq2_solutions.html) ([pdf](Markdowns/08_DE_analysis_with_DESeq2_solutions.pdf)) - [DESeq2 results extraction cheatsheet](additional_scripts_and_materials/DESeq2_results_cheatsheet.pdf) - [extra models plots](additional_scripts_and_materials/Expl_all.pdf) -* Session 7 - [Annotation of RNA-seq results](Markdowns/09_Annotation.html) +* Session 9 - [Annotation of RNA-seq results](Markdowns/09_Annotation.html) - [Practical](Markdowns/09_Annotation_and_Visualisation.html) ([pdf](Markdowns/09_Annotation_and_Visualisation.pdf)) - [Practical solutions](Markdowns/09_Annotation_and_Visualisation_Solutions.html) ([pdf](Markdowns/09_Annotation_and_Visualisation_Solutions.pdf)) -* Session 8 - [Visualisation differential expression results](Markdowns/10_Data_Visualisation.html) +* Session 10 - [Visualisation differential expression results](Markdowns/10_Data_Visualisation.html) - [practical solutions](Markdowns/10_Data_Visualisation_solutions.html) -* Session 9 - [Gene-set testing](Markdowns/11_Gene_set_testing_introduction.html) +* Session 11 - [Gene-set testing](Markdowns/11_Gene_set_testing_introduction.html) - [Practical (html)](Markdowns/11_Gene_set_testing.html) [(pdf)](Markdowns/11_Gene_set_testing.pdf) - [Practical solutions (html)](Markdowns/11_Gene_set_testing_solutions.html) (pdf)](Markdowns/11_Gene_set_testing_solutions.pdf)