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Error while running S aureus example #92

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rajneeshdadwal opened this issue Jun 20, 2022 · 1 comment
Open

Error while running S aureus example #92

rajneeshdadwal opened this issue Jun 20, 2022 · 1 comment
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@rajneeshdadwal
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I get a comment when running the phylophlan

graphlan_annotate.py \

--annot graphlan/isolates_annotation.txt \
output_isolates/RAxML_bestTree.input_isolates_refined.tre \
graphlan/isolates_annotated.xml

graphlan_annotate.py: command not found

graphlan.py \

graphlan/isolates_annotated.xml \
graphlan/saureus_isolates.png \
--dpi 300

graphlan.py: command not found

@fasnicar fasnicar self-assigned this Jun 30, 2022
@fasnicar
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Hi, I think you need to either install or clone the GraPhlAn repository https://github.com/biobakery/graphlan.

Many thanks,
Francesco

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