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Hello, from the log it seems you only provided 3 input files, while the minimum number for building a phylogenetic tree is 4. Hence all markers are discarded because only 3/4 genomes are found and hence there is nothing to concatenate.
Hello,
I have run my code as below.
But I got an error message. [e] No alignments found to concatenate.
Could you please let me know what is the issue here?
I have attached the log file.
Thank you,
slurm-894215.txt
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