From c8352ea389e7620809835630749b1ed5974d74b0 Mon Sep 17 00:00:00 2001 From: zjzxiaohei <108013625+zjzxiaohei@users.noreply.github.com> Date: Sun, 28 Jul 2024 13:56:43 +1200 Subject: [PATCH] Delete some comments #56 --- phylonco-lphy/examples/gt16ReadCountModel.lphy | 3 --- 1 file changed, 3 deletions(-) diff --git a/phylonco-lphy/examples/gt16ReadCountModel.lphy b/phylonco-lphy/examples/gt16ReadCountModel.lphy index fbbb524..8f19c31 100644 --- a/phylonco-lphy/examples/gt16ReadCountModel.lphy +++ b/phylonco-lphy/examples/gt16ReadCountModel.lphy @@ -7,11 +7,8 @@ l = 5; rates ~ Dirichlet(conc=[1.0, 2.0, 1.0, 1.0, 2.0, 1.0]); Q = gt16(freq=π, rates=rates); // construct the GT16 instantaneous rate matrix A ~ PhyloCTMC(L=l, Q=Q, tree=ψ, dataType=phasedGenotype()); -//epsilon ~ Beta(alpha=2, beta=18); -//delta ~ Beta(alpha=1.5, beta=4.5); epsilon = 0.1; delta = 0.24; -// cov = [rep(1, 5), rep(2, 5), rep(3, 5), rep(4, 5)]; meanT = 2.3; // average coverage = lognormal(meanT, sdT) sdT = 0.1; meanV = 0.1; // variance coverage = lognormal(meanV, sdV)