diff --git a/projects/cell-lines-proteomes/PXD030406/PXD030406.sdrf.tsv b/projects/cell-lines-proteomes/PXD030406/PXD030406.sdrf.tsv index a70730d1..e533662a 100644 --- a/projects/cell-lines-proteomes/PXD030406/PXD030406.sdrf.tsv +++ b/projects/cell-lines-proteomes/PXD030406/PXD030406.sdrf.tsv @@ -2,54 +2,51 @@ source name characteristics[organism] characteristics[organism part] characteris PXD030306-Sample-1 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 1 cell line run 34 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A5_EASY_iRT_500ng.raw HeLa PXD030306-Sample-1 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 1 cell line run 40 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B5_EASY_iRT_500ng.raw HeLa PXD030306-Sample-1 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 1 cell line run 46 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C5_EASY_iRT_500ng.raw HeLa -PXD030306-Sample-2 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 51 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 1 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A5_EASY_iRT_500ng.raw HeLa -PXD030306-Sample-2 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 52 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 2 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B5_EASY_iRT_500ng.raw HeLa -PXD030306-Sample-2 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 53 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C5_EASY_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm EasyPep_Thermo Scientific 3 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C5_EASY_iRT_500ng.raw HeLa -PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 22 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A2_FASP_iRT_500ng.raw HeLa -PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 37 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B2_FASP_iRT_500ng.raw HeLa -PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 43 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C2_FASP_iRT_500ng.raw HeLa -PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 6 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_02_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_02_LYS-GH_iRT_500ng.raw HeLa -PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 3 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_12_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_12_LYS-GH_iRT_500ng.raw HeLa -PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 24 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_22_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_22_LYS-GH_iRT_500ng.raw HeLa -PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 12 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_05_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_05_CMP-GH_iRT_500ng.raw HeLa -PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 7 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_15_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_15_CMP-GH_iRT_500ng.raw HeLa -PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 27 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_25_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_25_CMP-GH_iRT_500ng.raw HeLa -PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 15 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_08_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_08_EP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 17 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_18_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_18_EP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 30 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_28_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_28_EP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 8 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_03_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_03_LYS-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 25 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_23_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_23_LYS-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 46 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_13_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_13_LYS-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 16 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 18 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 31 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 48 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 1 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 49 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 2 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 50 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 3 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 13 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_06_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_06_CMP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 9 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_16_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_16_CMP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 28 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_26_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_26_CMP-SDC_iRT_500ng.raw HeLa -PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_10_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_10_SPEED_iRT_500ng.raw HeLa -PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 19 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_20_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_20_SPEED_iRT_500ng.raw HeLa -PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 32 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_30_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_30_SPEED_iRT_500ng.raw HeLa -PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 4 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_01_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_01_LYS-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 2 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_11_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_11_LYS-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 20 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_21_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_21_LYS-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 14 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_07_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_07_ACP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 11 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_17_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_17_ACP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 29 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_27_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_27_ACP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 10 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_04_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_04_CMP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 5 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_14_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_14_CMP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 26 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_24_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_24_CMP-UREA_iRT_500ng.raw HeLa -PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 21 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A1_iST1_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A1_iST1_iRT_500ng.raw HeLa -PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 36 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B1_iST_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B1_iST_iRT_500ng.raw HeLa -PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 42 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C1_iST_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C1_iST_iRT_500ng.raw HeLa -PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 23 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A3_SPC_iRT_500ng.raw HeLa -PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 38 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B3_SPC_iRT_500ng.raw HeLa -PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 44 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C3_SPC_iRT_500ng.raw HeLa -PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 33 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A4_SPC_SDC_iRT_500ng.raw HeLa -PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 39 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B4_SPC_SDC_iRT_500ng.raw HeLa -PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 45 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C4_SPC_SDC_iRT_500ng.raw HeLa -PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 18 cell line run 35 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A6_STRAP_iRT_500ng.raw HeLa -PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 18 cell line run 41 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B6_STRAP_iRT_500ng.raw HeLa -PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 18 cell line run 47 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C6_STRAP_iRT_500ng.raw HeLa \ No newline at end of file +PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 22 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A2_FASP_iRT_500ng.raw HeLa +PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 37 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B2_FASP_iRT_500ng.raw HeLa +PXD030306-Sample-3 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 2 cell line run 43 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C2_FASP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Filter-Aided Sample Preparation (FASP) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C2_FASP_iRT_500ng.raw HeLa +PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 6 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_02_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_02_LYS-GH_iRT_500ng.raw HeLa +PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 3 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_12_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_12_LYS-GH_iRT_500ng.raw HeLa +PXD030306-Sample-4 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 3 cell line run 24 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_22_LYS-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_22_LYS-GH_iRT_500ng.raw HeLa +PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 12 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_05_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_05_CMP-GH_iRT_500ng.raw HeLa +PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 7 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_15_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_15_CMP-GH_iRT_500ng.raw HeLa +PXD030306-Sample-5 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 4 cell line run 27 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_25_CMP-GH_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_25_CMP-GH_iRT_500ng.raw HeLa +PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 15 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_08_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_08_EP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 17 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_18_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_18_EP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-6 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 5 cell line run 30 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_28_EP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, GuanidinHCL buffer, ethanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_28_EP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 8 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_03_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_03_LYS-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 25 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_23_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_23_LYS-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-7 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 6 cell line run 46 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_13_LYS-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_13_LYS-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 16 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 18 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-8 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 7 cell line run 31 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 48 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 1 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_09_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 49 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 2 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_19_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-9 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 8 cell line run 50 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, acetone precipitation" 3 20200914_QExHFX1_RSLC1_Anrather_Hartl_MFPL_29_ACP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 13 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_06_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_06_CMP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 9 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_16_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_16_CMP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-10 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 9 cell line run 28 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_26_CMP-SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SDC, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_26_CMP-SDC_iRT_500ng.raw HeLa +PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_10_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_10_SPEED_iRT_500ng.raw HeLa +PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 19 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_20_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_20_SPEED_iRT_500ng.raw HeLa +PXD030306-Sample-11 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 10 cell line run 32 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_30_SPEED_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, SPEED protocol" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_30_SPEED_iRT_500ng.raw HeLa +PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 4 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_01_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_01_LYS-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 2 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_11_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_11_LYS-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-12 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 11 cell line run 20 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_21_LYS-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer,no precipitation step" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_21_LYS-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 14 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_07_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_07_ACP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 11 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_17_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_17_ACP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-13 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 12 cell line run 29 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_27_ACP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, acetone precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_27_ACP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 10 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_04_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_04_CMP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 5 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_14_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 2 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_14_CMP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-14 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 13 cell line run 26 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_24_CMP-UREA_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "In solution digest, Urea buffer, chlorophorm methanol precipitation" 3 20200525_QExHFX1_RSLC1_Anrather_Hartl_MFPL_24_CMP-UREA_iRT_500ng.raw HeLa +PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 21 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A1_iST1_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A1_iST1_iRT_500ng.raw HeLa +PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 36 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B1_iST_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B1_iST_iRT_500ng.raw HeLa +PXD030306-Sample-15 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 14 cell line run 42 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C1_iST_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm in-StageTip (iST)_PreOmics 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C1_iST_iRT_500ng.raw HeLa +PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 23 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A3_SPC_iRT_500ng.raw HeLa +PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 38 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B3_SPC_iRT_500ng.raw HeLa +PXD030306-Sample-16 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 15 cell line run 44 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C3_SPC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Solid-phase-enhanced sample preparation (SP3) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C3_SPC_iRT_500ng.raw HeLa +PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 33 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A4_SPC_SDC_iRT_500ng.raw HeLa +PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 39 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B4_SPC_SDC_iRT_500ng.raw HeLa +PXD030306-Sample-17 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 16 cell line run 45 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C4_SPC_SDC_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm "Solid-phase-enhanced sample preparation (SP3), SDC-buffer" 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C4_SPC_SDC_iRT_500ng.raw HeLa +PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 35 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 1 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_A6_STRAP_iRT_500ng.raw HeLa +PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 41 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 2 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_B6_STRAP_iRT_500ng.raw HeLa +PXD030306-Sample-18 Homo sapiens cervix Uterus HeLa CVCL_0030 African American 30Y6M Female Human papillomavirus-related cervical adenocarcinoma epithelial adult not available 17 cell line run 47 https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030406/20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C6_STRAP_iRT_500ng.raw 1 NT=High-performance liquid chromatography;AC=PRIDE:0000565 NT=Trypsin;AC=MS:1001251 NT=Q Exactive HF-X;AC=MS:1002877 NT=Carbamidomethyl;TA=C;AC=UNIMOD:4;MT=fixed NT=Acetyl;MT=Variable;PP=Any N-term;AC=UNIMOD:1 NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 "NT=Deamidated;AC=UNIMOD:7;TA=N,Q;MT=Variable" AC=MS:1002038;NT=label free sample 20 ppm 20 ppm Suspension trapping (STrap) 3 20200520_QExHFX1_RSLC1_Anrather_Hartl_MFPL_C6_STRAP_iRT_500ng.raw HeLa \ No newline at end of file