From 1c8199a8929007d2a23d3786a2883dbd0b6b63b6 Mon Sep 17 00:00:00 2001 From: Rockets2theMoon Date: Fri, 20 Sep 2024 07:29:36 -0700 Subject: [PATCH] summaries and intros - tools section (#505) --- docs/tools/bids-apps.md | 4 ++++ docs/tools/converters/index.md | 2 ++ docs/tools/converters/meeg.md | 4 ++++ docs/tools/converters/mri-pet.md | 3 +++ docs/tools/converters/others.md | 4 ++++ docs/tools/converters/physio.md | 3 +++ docs/tools/index.md | 13 +++++-------- 7 files changed, 25 insertions(+), 8 deletions(-) diff --git a/docs/tools/bids-apps.md b/docs/tools/bids-apps.md index 0f21c193..d1019660 100644 --- a/docs/tools/bids-apps.md +++ b/docs/tools/bids-apps.md @@ -1 +1,5 @@ +# BIDS Apps + +BIDS Apps are typically docker or singularity images that allow you to seamlessly run many applications without the need to installing all dependencies, and are generally guaranteed to run on your data, provided your data is BIDS compliant. Below is a list of many commonly used BIDS Apps. + {{ MACROS___generate_apps_table() }} diff --git a/docs/tools/converters/index.md b/docs/tools/converters/index.md index bcba83f7..fc4949b2 100644 --- a/docs/tools/converters/index.md +++ b/docs/tools/converters/index.md @@ -1 +1,3 @@ # Converters + +The following list of converters is provided to help you convert your raw data into a BIDS compliant dataset. \ No newline at end of file diff --git a/docs/tools/converters/meeg.md b/docs/tools/converters/meeg.md index 1925071c..7d1e92af 100644 --- a/docs/tools/converters/meeg.md +++ b/docs/tools/converters/meeg.md @@ -1 +1,5 @@ +#MEEG +The following list of converters can help you convert EEG, MEG, and iEEG data into BIDS compliant datasets. + + {{ MACROS___generate_converter_table(file="MEEG_converters.yml") }} diff --git a/docs/tools/converters/mri-pet.md b/docs/tools/converters/mri-pet.md index 859100a5..43eeabfd 100644 --- a/docs/tools/converters/mri-pet.md +++ b/docs/tools/converters/mri-pet.md @@ -1 +1,4 @@ +#MRI and PET +The following list of converters can help you convert MRI and PET data into BIDS compliant datasets. + {{ MACROS___generate_converter_table(file="converters.yml") }} diff --git a/docs/tools/converters/others.md b/docs/tools/converters/others.md index 36d8f68b..826022f9 100644 --- a/docs/tools/converters/others.md +++ b/docs/tools/converters/others.md @@ -1,3 +1,7 @@ +# Other converters + +The following tools can help you with miscelaneous tasks that may require you to convert to and from BIDS to work with certain, specific tools. These tools are very workflow specific and may not apply to the majority of projects. + {{ MACROS___generate_converter_table(file="from_BIDS_converters.yml") }} {{ MACROS___generate_converter_table(file="other_converters.yml") }} diff --git a/docs/tools/converters/physio.md b/docs/tools/converters/physio.md index fbe76796..dbecb840 100644 --- a/docs/tools/converters/physio.md +++ b/docs/tools/converters/physio.md @@ -1 +1,4 @@ +#Physio Data +The following list of converters can help you convert physiological data into BIDS compliant datasets. + {{ MACROS___generate_converter_table(file="physio_converters.yml") }} diff --git a/docs/tools/index.md b/docs/tools/index.md index 7602fac7..c61f9874 100644 --- a/docs/tools/index.md +++ b/docs/tools/index.md @@ -1,16 +1,13 @@ -# Tools +# BIDS Tools There is a rich ecosystem of tools to help you work with BIDS datasets. -There are many [converters](./converters/index.md) +- Converters: There are many [converters](./converters/index.md) to help you go from your sourcedata to have a BIDS dataset. - -The [BIDS validator](./validator.md) is there to ensure that your BIDS dataset is valid. - -You can use the [BIDS apps](./bids-apps.md) +- BIDS Validator: The [BIDS validator](./validator.md) is there to ensure that your BIDS dataset is valid and will work with BIDS Apps without any obvious issues. +- BIDS Apps: You can use [BIDS apps](./bids-apps.md) (automated pipelines that can be used as Docker or Apptainer images) to process your BIDS datasets. - -There are many other [tools](./others.md) to help you work with, edit or curate BIDS datasets. +- Misc: There are many other [tools](./others.md) to help you work with, edit, or curate BIDS datasets.