This is the data and script repository for the Canadian Bioinformatics Workshop's 2021 16S Analysis module.
download_Willis_et_al_data.sh: This BASH script downloads the data from Willis et al. (https://academic.oup.com/femsle/article/366/13/fnz152/5538761) from the EBI repository.
qiime_commands.sh: An initial set of commands to produce QIIME results, including importing the downloaded reads to .qza format.
The reads QIIME artifact file is around 500MB in size and is available externally, if needed, at: http://quoc.ca/static/CBW_Willis_reads.qza
Other pre-cooked artifact files are in qiime_artifacts.