diff --git a/publish.sh b/publish.sh
index 24ad55a..69ef9d9 100755
--- a/publish.sh
+++ b/publish.sh
@@ -1 +1 @@
-python -m twine upload dist/*
+python -m twine upload dist/* --username __token__
diff --git a/splicekit/core/annotation.py b/splicekit/core/annotation.py
index 336ec96..d995db9 100644
--- a/splicekit/core/annotation.py
+++ b/splicekit/core/annotation.py
@@ -383,10 +383,10 @@ def write_mds_job():
         filter_low = "filter_low"
 
     # mds
-    job = job_mds.format(queue=config.cluster_queue, memory=config.edgeR_memory, filter_low=filter_low, container=splicekit.config.container, core_path=os.path.dirname(core.__file__), input_folder=os.getcwd(), sample_membership=",".join(str(el) for el in sample_membership))
+    job = job_mds.format(core_path=os.path.dirname(core.__file__), queue=config.cluster_queue, memory=config.edgeR_memory, filter_low=filter_low, container=splicekit.config.container, input_folder=os.getcwd(), sample_membership=",".join(str(el) for el in sample_membership))
     fout_mds.write(job)
     fout_mds.close()        
-    job = job_sh_mds.format(filter_low=filter_low, container=splicekit.config.container, input_folder=os.getcwd(), sample_membership=",".join(str(el) for el in sample_membership))
+    job = job_sh_mds.format(core_path=os.path.dirname(core.__file__), filter_low=filter_low, container=splicekit.config.container, input_folder=os.getcwd(), sample_membership=",".join(str(el) for el in sample_membership))
     fsh_mds.write(job+"\n")
     fsh_mds.close()
 
diff --git a/splicekit/version b/splicekit/version
index 76914dd..2eb3c4f 100644
--- a/splicekit/version
+++ b/splicekit/version
@@ -1 +1 @@
-0.4.9
+0.5