diff --git a/devtools/requirements.txt b/devtools/requirements.txt index 54ff646a..44bcb5b4 100644 --- a/devtools/requirements.txt +++ b/devtools/requirements.txt @@ -148,7 +148,7 @@ scvelo==0.2.4 scvi-tools==0.15.0 seaborn==0.11.2 Send2Trash==1.8.0 -sinfo==0.3.4 +session-info==1.0.0 six==1.16.0 sortedcontainers==2.4.0 SQLAlchemy==1.4.31 diff --git a/docs/source/scripts/environment_besca.yml b/docs/source/scripts/environment_besca.yml index 3fc0e17b..7cacf1db 100644 --- a/docs/source/scripts/environment_besca.yml +++ b/docs/source/scripts/environment_besca.yml @@ -222,7 +222,7 @@ dependencies: - scvelo==0.2.2 - seaborn==0.11.0 - setuptools-scm==4.1.2 - - sinfo==0.3.1 + - session-info==1.0.0 - sortedcontainers==2.2.2 - statsmodels==0.12.0 - stdlib-list==0.7.0 diff --git a/docs/source/scripts/environment_besca_test.yml b/docs/source/scripts/environment_besca_test.yml index 8d4f1471..b9564a64 100644 --- a/docs/source/scripts/environment_besca_test.yml +++ b/docs/source/scripts/environment_besca_test.yml @@ -132,7 +132,7 @@ dependencies: - seaborn==0.11.0 - send2trash==1.5.0 - setuptools-scm==4.1.2 - - sinfo==0.3.1 + - session-info==1.0.0 - six==1.15.0 - sortedcontainers==2.2.2 - sqlalchemy==1.3.20 diff --git a/environment.lock.yml b/environment.lock.yml index 7f3f07ba..6ccbd834 100644 --- a/environment.lock.yml +++ b/environment.lock.yml @@ -285,7 +285,7 @@ dependencies: - seaborn-base=0.11.2=pyhd8ed1ab_0 - session-info=1.0.0=pyhd8ed1ab_0 - setuptools=59.5.0=py38h578d9bd_0 - - sinfo=0.3.1=py_0 + - session-info=1.0.0=py_0 - six=1.16.0=pyh6c4a22f_0 - sleef=3.5.1=h9b69904_2 - snowballstemmer=2.2.0=pyhd8ed1ab_0 diff --git a/environment.yml b/environment.yml index 99ced948..e5adeaf5 100644 --- a/environment.yml +++ b/environment.yml @@ -22,7 +22,7 @@ dependencies: - scanorama - scvelo - umap-learn - - sinfo + - session-info - pydot - scvi-tools - ipython diff --git a/requirements.txt b/requirements.txt index dc17b602..4cc95cd6 100644 --- a/requirements.txt +++ b/requirements.txt @@ -19,7 +19,7 @@ leidenalg>=0.8.3 scanorama scvelo umap-learn -sinfo +session-info pydot scvi-tools ipython diff --git a/workbooks/standard_workflow_besca2.ipynb b/workbooks/standard_workflow_besca2.ipynb index 1b7eae52..64e1f60f 100644 --- a/workbooks/standard_workflow_besca2.ipynb +++ b/workbooks/standard_workflow_besca2.ipynb @@ -57,7 +57,7 @@ "\n", "import logging\n", "import seaborn as sns\n", - "from sinfo import sinfo\n", + "import session_info\n", "import warnings\n", "\n", "# Seed is fixed for reproducible analysis.\n", @@ -1021,7 +1021,7 @@ "outputs": [], "source": [ "%%capture session_info\n", - "sinfo()\n" + "session_info.show()\n" ] }, { @@ -1030,7 +1030,7 @@ "metadata": {}, "outputs": [], "source": [ - "logging.info(session_info)" + "logging.info(session_info.show())" ] }, {