diff --git a/besca/datasets/genesets/CellNames_scseqCMs6_config.tsv b/besca/datasets/genesets/CellNames_scseqCMs6_config.tsv index b347b7b6..bcd54aa2 100644 --- a/besca/datasets/genesets/CellNames_scseqCMs6_config.tsv +++ b/besca/datasets/genesets/CellNames_scseqCMs6_config.tsv @@ -16,7 +16,7 @@ CD8Tcell Tcell 1 14 Tcell Hematopoietic 2.25 10 CD8Tcell_IL7Rmax CD8Tcell 4 17 CD4Tcell_IL7Rmax CD4Tcell 4 17.5 -RegTcell CD4Tcell 0.5 18 +RegTcell CD4Tcell 1 18 cDC1 cDC 1 19 cDC2 cDC 1 20.5 cDC Myeloid 1 22 @@ -39,7 +39,7 @@ Macrophage_MARCO Macrophage 1 19.5 NKTcell Tcell 2 50 gdTcell Tcell 1.5 38 CytotoxCD4Tcell CD4Tcell 3 34 -CytotoxCD8Tcell CD8Tcell 3 33 +CytotoxCD8Tcell CD8Tcell 4 33 ExhCD8Tcell CD8Tcell 2 41 cDC_CCR7 cDC 1 42 Langerhans cDC 1 43 @@ -98,7 +98,7 @@ ILC3 InnateLymphoid 2 105 ActTcell Tcell 2 106 NaiTcell Tcell 1 107 McellGut Epithelial 2 60.9 -Mast Hematopoietic 2.5 50.5 +Mast Hematopoietic 2.5 10.5 ColorectalCancer None 2 110 T1Pneumocyte Pneumocyte 2 111 T2Pneumocyte Pneumocyte 2 112 diff --git a/besca/datasets/nomenclature/CellTypes_v1.tsv b/besca/datasets/nomenclature/CellTypes_v1.tsv index b84db4e0..962425a9 100644 --- a/besca/datasets/nomenclature/CellTypes_v1.tsv +++ b/besca/datasets/nomenclature/CellTypes_v1.tsv @@ -67,7 +67,7 @@ cone retinal bipolar cell cone retinal bipolar cell CL:0000752 ConeBipolar 5 ret connective tissue cell connective tissue cell CL:0002320 ConnectiveTissue 1 animal cell CL:0000548 contractile cell contractile cell CL:0000183 Contractile 1 animal cell CL:0000548 cultured cell cultured cell CL:0000010 Cultured 0 -CXCL9-positive macrophage DB:0000053 Macrophage_CXCL9 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 +CXCL9-positive macrophage DB:0000055 Macrophage_CXCL9 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 cytotoxic CD56-dim natural killer cell cytotoxic CD56-dim natural killer cell CL:0000939 CD56dimNK 5 natural killer cell CL:0000623 innate lymphoid cell CL:0001065 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548 DN1 thymic pro-T cell DN1 thymic pro-T cell CL:0000894 DN1ProTcell 4 pro-T cell CL:0000827 lymphoid lineage restricted progenitor cell CL:0000838 hematopoietic cell CL:0000988 animal cell CL:0000548 dopaminergic neuron dopaminergic neuron CL:0000700 DopaminergicN 3 neuron CL:0000540 neural cell CL:0002319 animal cell CL:0000548 @@ -202,7 +202,7 @@ macrophage macrophage CL:0000235 Macrophage 3 myeloid leukocyte CL:0000766 h male germ line stem cell male germ line stem cell CL:0000016 MaleGerm 4 germ line stem cell CL:0000014 stem cell CL:0000034 precursor cell CL:0011115 animal cell CL:0000548 malignant cell malignant cell CL:0001064 Malignant 1 neoplastic cell CL:0001063 mammary gland glandular cell mammary gland glandular cell CL:1001586 MammaryGlandular 3 glandular epithelial cell CL:0000150 epithelial cell CL:0000066 animal cell CL:0000548 -MARCO-positive macrophage DB:0000052 Macrophage_MARCO 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 +MARCO-positive macrophage DB:0000054 Macrophage_MARCO 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 mast cell mast cell CL:0000097 Mast 3 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 mature NK T cell mature NK T cell CL:0000814 NKTcell 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548 megakaryocyte megakaryocyte CL:0000556 Megakaryocyte 2 hematopoietic cell CL:0000988 animal cell CL:0000548 @@ -219,7 +219,7 @@ microfold cell M cell of gut CL:0000682 McellGut 3 endo-epithelial cell CL:0 microglial cell microglial cell CL:0000129 Microglial 5 central nervous system macrophage CL:0000878 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 microvascular endothelial cell microvascular endothelial cell CL:2000008 MicroVascEndo 5 microvascular endothelial cell CL:2000008 blood vessel endothelial cell CL:0000071 endothelial cell of vascular tree CL:0002139 endothelial cell CL:0000115 animal cell CL:0000548 monocyte monocyte CL:0000576 Monocyte 3 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 -MSR1-positive macrophage DB:0000051 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 +MSR1-positive macrophage DB:0000056 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548 mucosal invariant T cell mucosal invariant T cell CL:0000940 MAIT 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548 Mueller cell Mueller cell CL:0000636 Mueller 5 astrocyte CL:0000127 macrogial cell CL:0000126 glial cell CL:0000125 neural cell CL:0002319 animal cell CL:0000548 multi fate stem cell multi fate stem cell CL:0000048 MultiFateStem 3 stem cell CL:0000034 precursor cell CL:0011115 animal cell CL:0000548