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README.md

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baysic

Dependencies

R packages:

Command

With these things installed and available in your path, you can run BAYSIC using:

baysic_blc.pl -f reference.fasta -p output_prefix -l /full/path/lca.R *.vcf  

-f reference.fa (alignment reference fasta file
-p prefix for output files names
-l location of lca.R file