From 0f16f80a09718e339bf942a796bb236a39c2ee83 Mon Sep 17 00:00:00 2001 From: Federica Brando Date: Thu, 21 Mar 2024 12:40:57 +0100 Subject: [PATCH 1/3] add: gcc and downgrade python to 3.7 --- .readthedocs.yaml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 78598a2..b4788e8 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -3,7 +3,9 @@ version: 2 build: os: "ubuntu-22.04" tools: - python: "3.12" + python: "3.7" + apt_packages: + - gcc # Build from the docs/ directory with Sphinx sphinx: From 5e3dc6147e7f3fc90e13aa032218d19df0e0ff94 Mon Sep 17 00:00:00 2001 From: Federica Brando Date: Thu, 21 Mar 2024 12:49:40 +0100 Subject: [PATCH 2/3] fix: docs plugin explanation --- docs/user_guide/plugin_system.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/user_guide/plugin_system.rst b/docs/user_guide/plugin_system.rst index e0fbb41..9983ee7 100644 --- a/docs/user_guide/plugin_system.rst +++ b/docs/user_guide/plugin_system.rst @@ -20,7 +20,7 @@ visualize how the different classes are connected and composed with **OpenVarian | As we have mentioned before, the plugin has to be present on the `annotation` file in order to be used. Custom plugins will be placed in the -folder where the environment variable `OPENVAR_PLUGIN` points (`/home/user/.local/openvariant/` by default). +folder where the environment variable :bash:`OPENVAR_PLUGIN` points (:bash:`/home/user/.local/openvariant/` by default). The `Builder` will manage to find them and apply the data transformation. Plugins will inherit `Context` and `Plugin` as base classes for each plugin. These classes are described as it follows: From d16432a3449c5aed78a1f42f46cc3e53624af7ba Mon Sep 17 00:00:00 2001 From: Federica Brando Date: Thu, 21 Mar 2024 12:55:11 +0100 Subject: [PATCH 3/3] fix: typo in docs --- docs/user_guide/plugin_system.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/user_guide/plugin_system.rst b/docs/user_guide/plugin_system.rst index 9983ee7..572caae 100644 --- a/docs/user_guide/plugin_system.rst +++ b/docs/user_guide/plugin_system.rst @@ -20,7 +20,7 @@ visualize how the different classes are connected and composed with **OpenVarian | As we have mentioned before, the plugin has to be present on the `annotation` file in order to be used. Custom plugins will be placed in the -folder where the environment variable :bash:`OPENVAR_PLUGIN` points (:bash:`/home/user/.local/openvariant/` by default). +folder where the environment variable :bash:`OPENVAR_PLUGIN` points (:bash:`/home/user/.local/share/openvariant/` by default). The `Builder` will manage to find them and apply the data transformation. Plugins will inherit `Context` and `Plugin` as base classes for each plugin. These classes are described as it follows: