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Support extended Newick? #4

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cossio opened this issue Jan 21, 2023 · 1 comment
Open

Support extended Newick? #4

cossio opened this issue Jan 21, 2023 · 1 comment

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@cossio
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cossio commented Jan 21, 2023

It seems the package cannot read extended Newick format trees?

I'm having trouble in particular reading trees stored in RFAM (https://docs.rfam.org/en/latest/api.html?highlight=nhx#tree-data). For example,

http://rfam.org/family/RF00360/tree/

@cossio cossio changed the title Support extended Newick Support extended Newick? Jan 21, 2023
@arzwa
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arzwa commented Jan 22, 2023

No, currently this package only supports the Newick format as defined by Joe Felsenstein here (https://evolution.genetics.washington.edu/phylip/newicktree.html), at least I hope it does so :). Due to a shift of focus, I am not actively using/developing this package right now, so I won't work on this, but I would welcome PRs with extensions of course.

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