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NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method. #152

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burcakotlu opened this issue Sep 5, 2019 · 1 comment

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@burcakotlu
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burcakotlu commented Sep 5, 2019

I installed pybedtools 0.8.0

################################
import pybedtools

a = pybedtools.example_bedtool('a.bed')
b = pybedtools.example_bedtool('b.bed')
a_and_b = a.intersect(b)
################################

################################
It gives the response below:
Traceback (most recent call last):
File "", line 1, in
File "/home/burcak/anaconda3/lib/python3.7/site-packages/pybedtools/bedtool.py", line 840, in decorated
result = method(self, *args, **kwargs)
File "/home/burcak/anaconda3/lib/python3.7/site-packages/pybedtools/bedtool.py", line 212, in not_implemented_func
raise NotImplementedError(help_str)
NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method.
################################

@ZHIDIHUAYUAN
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I encountered the same problem. Did you solve it?

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