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Hi @YifanLu2000, for benchmark of Merfish Hemibrain in figure 3A, did you use non-rigid alignment? I have checked the code below, I think the answer is yes? Thank you !
The text was updated successfully, but these errors were encountered:
Hi @yuling999666, by default, Spateo uses non-rigid transformations during the optimization process to ensure more accurate correspondence calculations. However, when computing the final spatial transformations, Spateo behaves differently depending on the mode:
In the 'SN-S' mode, Spateo returns results with only rigid transformations, i.e., rotation and translation.
In the 'SN-N' mode, Spateo returns results with both rigid and non-rigid transformations.
In our benchmark using public datasets, we use 'SN-S' mode to preserve the original topological structure of the data.
Hi @YifanLu2000, for benchmark of Merfish Hemibrain in figure 3A, did you use non-rigid alignment? I have checked the code below, I think the answer is yes? Thank you !
The text was updated successfully, but these errors were encountered: