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Gene symbols being split at hyphens '-' #17

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ibwoo opened this issue May 21, 2018 · 0 comments
Open

Gene symbols being split at hyphens '-' #17

ibwoo opened this issue May 21, 2018 · 0 comments

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@ibwoo
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ibwoo commented May 21, 2018

I came across an issue with the gene MT-ND4, the MuPeXI output gene symbol is "MT".
I suspect that it is to do with some overreaching line.split('-') or something, hopefully an easy fix!
I attach an example VCF file with a mutation replicating this issue.

I should add that when I run this file through VEP externally, the gene symbol returns as expected.

mito_hyphengenesymbol_example.vcf.zip

Thanks

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