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Light-Driven Arousal Dynamics Model

This repository aims at implementing the arousal dynamics model as described in:

[Postnova et al. 2016] Postnova, S., Lockley, S. W., & Robinson, P. A. (2016). Sleep Propensity under Forced Desynchrony in a Model of Arousal State Dynamics. Journal of Biological Rhythms, 31(5), 498–508. https://doi.org/10.1177/0748730416658806

[Postnova et al. 2018] Postnova, S., Lockley, S. W., & Robinson, P. A. (2018). Prediction of Cognitive Performance and Subjective Sleepiness Using a Model of Arousal Dynamics. Journal of Biological Rhythms, 33(2), 203–218. https://doi.org/10.1177/0748730418758454

[Tekieh et al. 2020] Tekieh, T., Lockley, S. W., Robinson, P. A., McCloskey, S., Zobaer, M. S., & Postnova, S. (2020). Modeling melanopsin‐mediated effects of light on circadian phase, melatonin suppression, and subjective sleepiness. Journal of Pineal Research, 69(3), e12681. https://doi.org/10.1111/jpi.12681

Parameters and equations are taken from the papers.

Project led by Clotilde Pierson. Implementation by Alexander Ulbrich.

To Do

  • Add license
  • Add copyright notices
  • Add reference to equations as code comments
  • Implement the revised model (in progress)
  • Write unit tests
  • Validate results
  • Clean up code
  • Package python code