requirements-dev.txt

sphinx
recommonmark
sphinx-autobuild
ipykernel
nbsphinx
pylint
autopep8
pytest
pytest-cov
pytest-xdist
pytest-sugar
pytest-clarity; python_version >= '3.6'
tox
coveralls
pluggy<1,>=0.12.0
docstr-coverage
git+https://github.com/achillesrasquinha/bpyutils.git@develop#egg=bpyutils
# git+https://github.com/achillesrasquinha/deeply.git
multiqc
cutadapt
jinja2
tqdm
requests
rpy2
BioPython
parallel-fastq-dump
pipenv
jedi<0.18
ipython
bumpversion
vulture
safety
pre-commit
twine

jupyter

Flask