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Open_neuroscience.html
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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Open Neuroscience</title>
<!-- The important Javascript libraries -->
<link rel="stylesheet" href="css/reveal.css">
<link rel="stylesheet" href="css/theme/black.css" id="theme">
<!-- Code syntax highlighting -->
<link rel="stylesheet" href="lib/css/zenburn.css">
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<script>
var link = document.createElement( 'link' );
link.rel = 'stylesheet';
link.type = 'text/css';
link.href = window.location.search.match( /print-pdf/gi ) ? 'css/print/pdf.css' : 'css/print/paper.css';
document.getElementsByTagName( 'head' )[0].appendChild( link );
</script>
<!--[if lt IE 9]>
<script src="lib/js/html5shiv.js"></script>
<![endif]-->
</head>
<body>
<div class="reveal">
<!-- Any section element inside of this container is displayed as a slide -->
<div class="slides">
<section>
<section data-background="images/IBIS_image.png">
<h1 style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;">Open Neuroscience</h1>
<h4 style="padding-bottom:0px; margin-bottom:0px;text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;" align="center">THE Cuban and Canadian Ecosystem</h4>
<!--ENTER DATE OF PRESENTATION HERE-->
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"><small>February 2019</small></p>
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"><small>Samir Das<br>Associate Director - Research Software Development</small></p>
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"><small><b>McGill Centre for Integrative Neuroscience</b><br><b>Montreal Neurological Institute</b></small></p>
<table class="reveal">
<tr>
<td width="40%" style="vertical-align: middle">
<a href="https://mcin-cnim.ca/" target="_blank"><img src="images/MCIN.png" style="border: 0"></a>
</td>
<td width="15%" style="vertical-align: middle">
<a href="http://www.mcgill.ca/neuro/" target="_blank"><img src="images/Neuro.png" style="border: 0"></a>
</td>
<td width="35%" style="vertical-align: middle">
<a href="http://ludmercentre.ca/" target="_blank"><img src="images/ludmer-new-white.png" style="border: 0"></a>
</td>
</tr>
</table>
</section>
<section data-transition="convex">
<img src="images/Spock.png">
</section>
</section>
<!-- Neuroscience -->
<section>
<!-- Multi-resolution/trajectories -->
<section>
<img src="images/Neuroinformatics_scope.jpg">
</section>
<section>
<img src="images/Cross_modal.png">
</section>
</section>
<!-- Open Science Initiatives -->
<section data-transition="convex" id="openscience-destination">
<section>
<h2>Open Science Initiatives</h2>
<table class="reveal">
<tr>
<td width="47%" style="vertical-align: middle">
<img src="images/Nature_open_science.png">
</td>
<td width="53%" style="vertical-align: middle">
<img src="images/Open_science.png">
</td></tr></table>
</section>
<!-- CONP -->
<section data-background="images/CONP.png" data-background-size="100%">
</section>
<!-- TOSI -->
<section>
<img src="images/TOSI.png">
</section>
<!-- MNI Open Science CyberInfrastructure -->
<section>
<h2><Demo</h2>
<img src="images/Open_science_paper.png">
</section>
<!-- HBHL -->
<section>
<img src="images/HBHL.png">
</section>
</section>
<!-- Data sharing -->
<section>
<!-- Data sharing issues-->
<section data-transition="concave">
<h2>Data Sharing Issues</h2>
<table>
<thead>
<tr>
<th><font color="yellow">Benefits </font></th>
<th><font color="yellow">Hurdles </font></th>
</tr>
</thead>
<tbody>
<tr>
<td>More citations</td>
<td>Fear</td>
</tr>
<tr>
<td>Reduces waste/duplication</td>
<td>Technical challenges</td>
</tr>
<tr>
<td>Increased exposure</td>
<td>Privacy concerns</td>
</tr>
<tr>
<td>Access to larger datasets</td>
<td>Data Harmonization</td>
</tr>
<tr>
<td>Access to rare data</td>
<td>Interoperability</td>
</tr>
<tr>
<td>Less attrition</td>
<td>Reproducibility</td>
</tr>
<tr>
<td>Increased validation</td>
<td>Obtaining ethics</td>
</tr>
<tr>
<td>Saving Tax $$/more funding</td>
<td>Public dataset not identical</td>
</tr>
</tbody>
</table>
</section>
<!-- Data Publishing -->
<section data-transition="fade" data-background="images/data_publishing.png">
<h2 style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"><font color="white">Data Publishing<br> - Not Data Sharing -</font></h2>
</section>
<!-- EU going Open Access -->
<section data-transition="fade">
<img src="images/Open_access.png">
</section>
<!-- FAIR -->
<section data-transition="fade">
<img src="images/FAIR.png">
</section>
<!-- COBIDAS -->
<section>
<img src="images/COBIDAS_Nature_new.png">
</section>
<!-- Faculty 1000 -->
<section data-transition="fade">
<img src="images/F1000.png">
</section>
</section>
<!-- Standardization -->
<section data-transition="concave">
<section>
<h2>Standardization</h2>
<img src="images/INCF_2019.png">
</section>
<!-- BIDS -->
<section data-transition="fade" data-background="images/BIDS.png">
<a href="http://bids.neuroimaging.io/" target="_blank"><p style="margin:-280px 0px 0px 0px;"><small>http://bids.neuroimaging.io/</small></p></a>
</section>
<!-- BIDS -->
<section data-transition="fade">
<table class="reveal">
<h2>BIDS Format</h2>
<tr>
<td width="42%" style="vertical-align: middle">
<img src="images/BIDS_paper.png">
</td>
<td width="58%" style="vertical-align: middle">
<img src="images/BIDS_structure.png">
</td>
</tr></table>
</section>
<!-- Boutiques -->
<section>
<img src="images/Boutiques_paper.png">
</section>
<!-- NeuroImgaging Data Model (NiDM)-->
<section data-transition="fade">
<table class="reveal">
<h2>NeuroImaging Data Model</h2>
<tr>
<td width="55%" style="vertical-align: middle">
<img src="images/Nidm.png">
</td>
<td width="45%" style="vertical-align: middle">
<img src="images/NIDM_paper.png">
</td>
</tr></table>
</section>
<!-- Working group for atlas building template-->
<section data-transition="fade">
<h2>Atlas & template building</h2>
<img src="images/Atlases.png">
<p><font color="yellow">Goal:</font></p>
<p>Standardize JSON metadata to describe atlases</p>
<p>For either volumetric or surface atlases</p>
</section>
<!-- Genomics -->
<section>
<img src="images/Genomics.png">
</section>
<section>
<img src="images/methylation_data.png">
</section>
</section>
<!-- MNI ecosystem menu/summary-->
<section>
<section data-background="images/mni_eco_info_5.jpg" data-background-size="100%">
</section>
<!-- MNI PAPER -->
<section data-transition="fade">
<a href="https://www.researchgate.net/publication/281780543_The_MNI_data-sharing_and_processing_ecosystem" target="_blank"><img src="images/MNI_ecosystem_paper.png" width="90%"></a>
</section>
<!-- WHAT IS LORIS? -->
<section>
<a href="LORIS_indepth.html#/2" target="_blank"><h2>WHAT IS LORIS?</h2></a>
<table class="reveal">
<tr>
<td width="50%" style="vertical-align: middle">
<a href="http://loris.ca/" target="_blank"><img src="images/loris-new-white.png"></a>
<p><small> “..is a modular and <font color="f27c30">extensible</font> web-based data and project management software that integrates all aspects of a <font color="f27c30">multi-center</font> neuroimaging research study. It is an <font color="f27c30">OPEN SOURCE</font> framework and database suitable for managing <font color="f27c30">large datasets</font>.”</small></p>
</td>
<td>
<a href="https://www.frontiersin.org/articles/10.3389/fninf.2011.00037/full" target="_blank"><img src="images/LORIS_paper.png"></a>
</td>
</tr>
</table>
</section>
<section data-background="images/LORIS_global_2.jpg">
<h1 style="margin: 275px 0px 0px 0px;"><font color ="0d4983">LORIS Globally</font></h1>
</section>
<!-- WHAT DOES LORIS DO? -->
<section>
<h2>What does LORIS do?</h2>
<img src="images/loris_purpose.jpg" style="border:0" width="75%">
</section>
<section>
<h2>Extensible and modular design</h2>
<table class="reveal" style="margin:-20px 0px -20px 0px;">
<tr>
<td width="50%" style="vertical-align: top">
<img src="images/Dashboard.png">
</td>
<td width="50%" style="vertical-align: middle">
<img src="images/BrainBrowser_VolumeViewer.png">
</td>
</tr>
</table>
<img src="images/Imaging_scans.png" width="57%">
</section>
<section data-background="images/DQT_Define_new.png" data-background-size="100%">
<h2><font color="0f4078">Cross-Modal Querying</font></h2>
</section>
<section data-background="images/DQT_Results_new.png" data-background-size="100%">
<h2><font color="0f4078">Real-Time Query Results</font></h2>
</section>
<section data-background="images/DQT_Stats_new.png" data-background-size="100%">
<h2><font color="0f4078">Statistical Analysis</font></h2>
</section>
<section data-background="images/Genomics_CNV.png" data-background-size="100%">
<h2 style="margin: -125px 0px 0px 0px;"><font color="0f4078">Genomics Browser</font></h2>
</section>
<section data-transition="concave">
<img src="images/EEG_BIDS.png">
</section>
<section>
<img src="images/EEG.png">
</section>
<!--CBRAIN-->
<section>
<a href="CBRAIN_indepth.html#/2" target="_blank"><h2>WHAT IS CBRAIN?</h2></a>
<table class="reveal">
<tr>
<td width="50%" style="vertical-align: middle;">
<a href="https://mcin-cnim.ca/technology/cbrain/" target="_blank"><img align="center" src="images/cbrain-blue.png" style="border:0; border-radius:30px;" width="90%"></a>
<p><small><br>“..is an <font color="12a3d8">OPEN SOURCE</font> web-based collaborative <font color="12a3d8">High-Performance Computing (HPC)</font> platform for <font color="12a3d8">neuroimaging research</font>, connecting researchers to the <font color="12a3d8">tools</font> required to handle <font color="12a3d8">large datasets</font>.”</small></p>
</td>
<td width="50%" style="vertical-align: middle">
<a href="https://www.frontiersin.org/articles/10.3389/fninf.2014.00054/full" target="_blank"><img src="images/CBRAIN_paper.png" width="90%"></a>
</td>
</tr>
</table>
</section>
<!-- What does CBRAIN do? -->
<section data-background="images/cbrain_uniview.png">
<p style="background-color:white; padding:0; border-radius:15px;margin:-20px -50px 0px -50px;"><b><font color="12a3d8">..aggregates multiple distributed file systems into uniform view</font></b></p>
</section>
<!--CBRAIN SCHEMA-->
<section data-background="images/CBRAIN_arch.png" data-background-size="65%">
</section>
<!-- NIAK -->
<section>
<img src="images/NIAK.jpg">
</section>
</section>
<!--BrainBrowser-->
<section data-transition="convex">
<section>
<a href = "Brain_browser.html" target="_blank"><h2>BrainBrowser</h2></a>
<p>..a set of web-based <font color="f27c30"><b>3D visualization tools</b></font> primarily used for viewing <font color="12a3d8">neurological data</font> i.e. <font color="12a3d8">MRI scans</font>.</p>
<p><small>It allows for real-time <font color="f27c30">manipulation</font> and <font color="f27c30">analysis</font> of 3D neuroimaging data through any modern web browser. <a href = "https://brainbrowser.cbrain.mcgill.ca/" target="_blank">TRY ME!</a></small></p>
<img src="images/Brain_browser_sample.png">
</section>
<!--Surface Viewer-->
<section data-background="images/surface_viewer.png" data-background-size="100%">
</section>
<!--Volume Viewer-->
<section data-background="images/BrainBrowser_VolumeViewer.png" data-background-size="80%">
<h3 style="margin:-270px 0px -250px 0px;"><font color="red">Volume Viewer on LORIS</font></h3>
</section>
</section>
<!-- STUDIES -->
<section>
<section data-transition="convex">
<a href="https://pediatricmri.nih.gov/nihpd/info/publications.html" target="_blank"><img src="images/NIHPD_logo.jpg"></a>
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<a href="http://www.sciencedirect.com/science/article/pii/S105381190500710X?via%3Dihub" target="_blank"><img src="images/NIHPD_paper.png"></a>
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/MRI_images_several.jpg">
</td>
<td width="30%" style="vertical-align: middle">
<p><small>
<ul>
<li>8 year study</li>
<li>Longitudinal data</li>
<li>532 subjects</li>
<li>8000 distinct variables</li>
<li>37000 individual assessments</li>
<li>T1, T2, PD, DTI</li>
<li>Spectroscopy</li>
<li>∼3TB of imaging data</li>
<li>2000 MRI acquisitions</li>
</ul>
</small></p>
</td>
</tr>
</table>
</section>
<section data-transition="convex">
<a href="http://www.ibis-network.org/" target="_blank"><img src="images/IBIS.png"></a>
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<a href="https://ajp.psychiatryonline.org/doi/abs/10.1176/appi.ajp.2011.11091447?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub%3Dpubmed" target="_blank"><img src="images/IBIS_paper.png"></a>
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/IBIS_image.png">
</td>
<td width="30%" style="vertical-align: middle">
<p><small>
<ul>
<li>Infant brain development in autism</li>
<li>3000+ scans</li>
<li>700+ subjects</li>
<li>7000 distinct variables</li>
<li>150,000+ individual assessments</li>
<li>T1, T2, DTI, BOLD</li>
<li>∼5 TBs of imaging data</li>
<li>Genetic/biospecimen data</li>
</ul>
</small></p>
</td>
</tr></table>
</section>
<!--CCNA-->
<section data-transition="convex">
<a href="http://ccna-ccnv.ca/en/" target="_blank"><img src="images/CCNA.png" width="85%"></a>
</section>
<!-- TOSI structure -->
<section>
<img src="images/Tosi_Structure.png">
</section>
<!-- TOSI projects -->
<section>
<img src="images/Tosi_Dataset.png" width="77%">
</section>
<!-- PreventAD -->
<section>
<img src="images/PreventAD.png" width="87%">
</section>
<!-- Phantom -->
<section>
<img src="images/Phantom.png">
</section>
<!-- QPN -->
<section data-transition="convex">
<a href="http://rpq-qpn.ca/en/" target="_blank"><img src="images/QPN.png" width="90%"></a>
</section>
<!-- BigBrain -->
<section>
<table class="reveal">
<a href="Big_brain.html#/2" target="_blank"><h2><font color="2bfcf8">BigBrain</h2></font></a>
<tr>
<td width="50%" style="vertical-align: middle">
<p align="center"><small>The <font color="2bfcf8">BigBrain</font> is the digitized reconstruction of <font color="f27c30">7404 hi-res</font> coronal histological sections (20 microns isotropic).</small></p>
<p align="center"><small>It is the brain of a <font color="2bfcf8">65 year-old man</font> with <font color="f27c30">no neurological or psychiatric diseases</font> in clinical records at time of death.</small></p>
<div align="center"><img src="images/BigBrain.png" width="73%" style="border:0;"></div>
</td>
<td width="50%" style="vertical-align: middle">
<a href="http://science.sciencemag.org/content/340/6139/1472" target="_blank"><img src="images/BigBrain_paper.png"></a>
</td>
</tr>
</table>
</section>
<!-- OMEGA - small pilot, interest has spiked -->
<section data-transition="convex">
<table class="reveal">
<h2><a href="https://omega.bic.mni.mcgill.ca">OMEGA</a></h2>
<tr>
<td width="65%" style="vertical-align: middle">
<a href="http://www.sciencedirect.com/science/article/pii/S1053811915003183" target="_blank"><img src="images/OMEGA.png"></a>
</td>
<td width="35%" style="vertical-align: middle">
<p><small>
<ul>
<li><a href="https://www.mcgill.ca/bic/resources/omega" target="_blank">Open MEG Archive</a></li><br>
<li>First open MEG repository</li><br>
<li>180 user accounts created</li><br>
<li>Associated structural data</li><br>
<li>500+ reads on academia.edu</li><br>
</ul>
</small></p>
</td>
</tr>
</table>
</section>
<!-- ABIDE -->
<section data-transition="convex">
<a href="http://preprocessed-connectomes-project.org/abide/" target="_blank"><img src="images/ABIDE_preprocessed.png"></a>
</section>
<!-- Cuban Brain Mapping -->
<section data-transition="convex">
<a href="" target="_blank"><img src="images/Cuban_brain_mapping.png" width="120%"></a>
</section>
</section>
<!--DATA SHARING-->
<section>
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<section data-background="images/Interoperability.jpg" data-background-size="65%">
</section>
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<h2>Collaboration with global data sharing groups</h2>
<p>
<span class="fragment"><a href="https://www.incf.org" target="_blank">INCF, </a></span>
<span class="fragment"><a href="https://osf.io" target="_blank">Open Science Framework, </a></span>
<span class="fragment"><a href="https://www.nitrc.org" target="_blank">NITRC, </a></span>
<span class="fragment"><a href="http://alleninstitute.org" target="_blank">Allen Institute, </a></span>
<span class="fragment"><a href="https://ndar.nih.gov" target="_blank">NDAR, </a></span>
<span class="fragment"><a href="https://openfmri.org" target="_blank">HAWG (Atlas Building Group), </a></span>
<span class="fragment"><a href="http://www.humanbrainmapping.org" target="_blank">Organization Human Brain Mapping, </a></span>
<span class="fragment"><a href="https://www.humanbrainproject.eu" target="_blank">Human Brain Project, </a></span>
<span class="fragment"><a href="https://www.computecanada.ca" target="_blank">Compute Canada, </a></span>
<span class="fragment"><a href="https://www.maelstrom-research.org" target="_blank">Maelstrom, </a></span>
<span class="fragment"><a href="" target="_blank">Edinburgh BRAINS ImageBank, </a></span>
<span class="fragment"><a href="http://coins.mrn.org" target="_blank">COINS, </a></span>
<span class="fragment"><a href="http://www.xnat.org" target="_blank">XNAT, </a></span>
<span class="fragment"><a href="http://www.creatis.insa-lyon.fr/vip/" target="_blank">VIP, </a></span>
<span class="fragment"><a href="https://www.braincode.ca" target="_blank">BrainCode, </a></span>
<span class="fragment"><a href="http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/" target="_blank">BIDS, </a></span>
<span class="fragment"><a href="http://www.cima-q.ca" target="_blank">NIDM, </a></span>
<span class="fragment"><a href="http://www.neurodevnet.ca" target="_blank">NeuroDevNet, </a></span>
<span class="fragment"><a href="http://gusto.sg/v2/index.php" target="_blank">GUSTO, </a></span>
<span class="fragment"><a href="http://rpq-qpn.ca/en/" target="_blank">QPN, </a></span>
<span class="fragment"><a href="http://www.neurobureau.org" target="_blank">Boutiques, </a></span>
<span class="fragment"><a href="http://www.neurobureau.org" target="_blank">VIP </a></span>
</p>
</section>
<section data-transition="zoom">
<h2>Consolidated datasets</h2>
<p>
<span class="fragment"><a href="http://adni.loni.usc.edu" target="_blank">ADNI, </a></span>
<span class="fragment"><a href="http://www.loni.usc.edu/ICBM/" target="_blank">ICBM, </a></span>
<span class="fragment"><a href="http://pediatricmri.nih.gov/nihpd/info/index.html" target="_blank">NIHPD, </a></span>
<span class="fragment"><a href="http://mouse.brain-map.org" target="_blank">Allen Mouse Brain, </a></span>
<span class="fragment"><a href="https://ndar.nih.gov/edit_collection.html?id=19" target="_blank">IBIS, </a></span>
<span class="fragment"><a href="http://www.generationr.nl/researchers.html" target="_blank">Generation-R, </a></span>
<span class="fragment"><a href="http://fcon_1000.projects.nitrc.org/indi/abide/" target="_blank">ABIDE, </a></span>
<span class="fragment"><a href="http://preprocessed-connectomes-project.org/abide/" target="_blank">ABIDE Preprocessed, </a></span>
<span class="fragment"><a href="http://fcon_1000.projects.nitrc.org/indi/adhd200/index.html" target="_blank">ADHD 200, </a></span>
<span class="fragment"><a href="http://neurobureau.projects.nitrc.org/ADHD200/Introduction.html" target="_blank">ADHD Preprocessed, </a></span>
<span class="fragment"><a href="http://www.humanconnectomeproject.org" target="_blank">Human Connectome Project, </a></span>
<span class="fragment"><a href="https://omega.bic.mni.mcgill.ca/main.php" target="_blank">OMEGA, </a></span>
<span class="fragment"><a href="http://www.ukbiobank.ac.uk" target="_blank">UK Biobank, </a></span>
<span class="fragment"><a href="" target="_blank">Edinburgh Biobank, </a></span>
<span class="fragment"><a href="https://bigbrain.loris.ca/main.php" target="_blank">BigBrain, </a></span>
<span class="fragment"><a href="http://www.talairach.org" target="_blank">Talairach, </a></span>
<span class="fragment"><a href="http://fcon_1000.projects.nitrc.org/indi/enhanced/" target="_blank">1000 Functional Connectomes, </a></span>
<span class="fragment"><a href="http://www.bic.mni.mcgill.ca/ServicesAtlases/Colin27" target="_blank">Colin 27, </a></span>
<span class="fragment"><a href="http://www.bic.mni.mcgill.ca/ServicesAtlases/MNI305" target="_blank">MNI 305, </a></span>
<span class="fragment"><a href="http://journal.frontiersin.org/article/10.3389/fnagi.2014.00149/full" target="_blank">1000 Brains, </a></span>
<span class="fragment"><a href="http://qnl.bu.edu/obart/explore/AAL/" target="_blank">AAL, </a></span>
<span class="fragment"><a href="" target="_blank">ANIMAL, </a></span>
<span class="fragment"><a href="" target="_blank">MAVAN, </a></span>
<span class="fragment"><a href="http://www.preventad.com" target="_blank">PreventAD, </a></span>
<span class="fragment"><a href="http://pingstudy.ucsd.edu" target="_blank">PING, </a></span>
<span class="fragment"><a href="http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152Lin" target="_blank">MNI 152, </a></span>
<span class="fragment"><a href="http://www.bic.mni.mcgill.ca/ServicesAtlases/MNI305" target="_blank">MNI 305, </a></span>
<span class="fragment"><a href="http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/" target="_blank">FSL... </a></span>
</p>
<p><b><font color="green"><span class="fragment">So </span></font>
<font color="yellow"><span class="fragment">many </span></font></b>
<font color="red"><span class="fragment">datasets! </span></font>
</p>
</section>
<section data-transition="convex">
<h2>Tools and Environments</h2>
<p>
<span class="fragment"><a href="https://www.incf.org" target="_blank">Neurovault, </a></span>
<span class="fragment"><a href="https://osf.io" target="_blank">NeuroSynth, </a></span>
<span class="fragment"><a href="https://www.nitrc.org" target="_blank">CIVET, </a></span>
<span class="fragment"><a href="http://alleninstitute.org" target="_blank">VIP, </a></span>
<span class="fragment"><a href="https://ndar.nih.gov" target="_blank">Boutiques, </a></span>
<span class="fragment"><a href="https://openfmri.org" target="_blank">Git-Annex, </a></span>
<span class="fragment"><a href="http://www.humanbrainmapping.org" target="_blank">SOLID, </a></span>
<span class="fragment"><a href="https://www.humanbrainproject.eu" target="_blank">BIDS, </a></span>
<span class="fragment"><a href="https://www.computecanada.ca" target="_blank">NiDM, </a></span>
<span class="fragment"><a href="https://www.maelstrom-research.org" target="_blank">DiCAT, </a></span>
<span class="fragment"><a href="http://www.ukbiobank.ac.uk" target="_blank">DCMTK, </a></span>
<span class="fragment"><a href="http://nipy.org/nipype/" target="_blank">NiPype, </a></span>
<span class="fragment"><a href="http://www.braininitiative.nih.gov" target="_blank">ITK, </a></span>
<span class="fragment"><a href="http://enigma.ini.usc.edu" target="_blank">Freesurfer, </a></span>
<span class="fragment"><a href="http://fcon_1000.projects.nitrc.org/indi/enhanced/" target="_blank">SPM, </a></span>
<span class="fragment"><a href="http://www.loni.usc.edu" target="_blank">FSL, </a></span>
<span class="fragment"><a href="http://" target="_blank">Mobile MRI, </a></span>
<span class="fragment"><a href="http://coins.mrn.org" target="_blank">1000 Brains, </a></span>
<span class="fragment"><a href="http://www.xnat.org" target="_blank">AAL, </a></span>
<span class="fragment"><a href="https://www.braincode.ca" target="_blank">BrainCode, </a></span>
<span class="fragment"><a href="https://github.com" target="_blank">GitHub, </a></span>
<span class="fragment"><a href="https://aws.amazon.com" target="_blank">Amazon Cloud, </a></span>
<span class="fragment"><a href="http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/" target="_blank">FSL, </a></span>
<span class="fragment"><a href="https://ida.loni.usc.edu" target="_blank">IDA, </a></span>
<span class="fragment"><a href="http://brainvisa.info" target="_blank">BrainVisa, </a></span>
<span class="fragment"><a href="https://cmind.research.cchmc.org" target="_blank">DICOM Confidential, </a></span>
<span class="fragment"><a href="https://cmind.research.cchmc.org" target="_blank">DockerHub, </a></span>
<span class="fragment"><a href="http://www.opengatecollaboration.org" target="_blank">Gate, </a></span>
<span class="fragment"><a href="https://cmind.research.cchmc.org" target="_blank">CMIND... </a></span>
</p>
<p><b><font color="green"><span class="fragment">So </span></font>
<font color="yellow"><span class="fragment">many </span></font></b>
<font color="red"><span class="fragment">Tools! </span></font>
</section>
</section>
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<section>
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<td width="30%" style="vertical-align: middle">
<p>Thank you!<small><font color="blue" size="4">Acknowledgements:</font><font color="black" size="2"> Alan Evans, Alex Zijdenbos, Dario Vins, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastian Muehlboeck, Reza Adalat, Louis Collins, Vladimir Fonov, Marc Rousseau, Mia Petkova, Rathi Gnanasekaran, David Brownlee, Tarek Sherif, Pierre Rioux, Nic Kassis, Leigh MacIntyre, Claude Lepage, Ilana Leppert, Natasha Beck, Tristan Glatard, Bert Vincent, Lindsay Lewis, Najma Mahani, Elodie Portales-Casamar, Alden Woodward, Sylvain Milot, Jean Francois Malouin, Sylvain Baillet, Daniel Kroetz, Martin Weiss, Mathieu Desrosier, Jason Karamchandani, Amit Bar-Or, Ted Fon, John Brietner, Derek Lo, Patrick Bermudez, Chris Steele, Pamela Patterson and one of my favourites: Pierre Bellec!</font></small></p>
<p><font color="blue" size="4">LORIS team on left</font></p>
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