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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Open Science and Data Sharing</title>
<meta name="description" content="A framework for easily creating beautiful presentations using HTML">
<meta name="author" content="Hakim El Hattab">
<meta name="apple-mobile-web-app-capable" content="yes" />
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<!-- The important Javascript libraries -->
<link rel="stylesheet" href="css/reveal.css">
<link rel="stylesheet" href="css/theme/black.css" id="theme">
<!-- Code syntax highlighting -->
<link rel="stylesheet" href="lib/css/zenburn.css">
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<script>
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</head>
<body>
<div class="reveal">
<!-- Any section element inside of this container is displayed as a slide -->
<div class="slides">
<!-- Data Sharing -->
<section>
<section>
<h2>Data sharing <br> The Good, the Bad, and the Open</h2>
<table class="reveal">
<tr>
<p><font color='yellow'>Open Science - Dean Eidelman visit</font></p>
<p><small>January 24, 2018<br>
Samir Das - Software Manager<br>
McGill Centre for Integrative Neuroscience<br> Montreal Neurological Institute <br>[email protected]</small></p>
</tr>
<tr>
<td width="40%" style="vertical-align: middle">
<img src="images/MCIN.png" style="border: 0">
</td>
<td width="15%" style="vertical-align: middle">
<img src="images/Neuro.png" style="border: 0">
</td>
<td width="35%" style="vertical-align: middle">
<img src="images/ludmer-new-white.png" style="border: 0">
</td>
</tr>
</table>
</section>
<section data-transition="convex">
<img src="images/Spock.png">
</section>
</section>
<!-- LORIS (5 slides) -->
<section data-transition="convex">
<section>
<a href="http://loris.ca/" target="_blank"><h2>WHAT IS LORIS?</h2></a>
<table class="reveal">
<tr>
<td width="50%" style="vertical-align: middle">
<a href="http://loris.ca/" target="_blank"><img src="images/loris-new-white.png"></a>
<p><small> “LORIS is a modular and <font color="f27c30">extensible</font> web-based data management system that integrates all aspects of a <font color="f27c30">multi-center</font> study: from <font color="f27c30">heterogeneous data acquisition</font> (imaging, clinical, behavior, genetics) to storage, <font color="f27c30">processing</font> and ultimately <font color="f27c30">dissemination</font>.”</small></p>
</td>
<td>
<img src="images/LORIS_paper.png">
</td></tr></table>
</section>
<!-- LORIS globally -->
<section data-background="images/LORIS_global.jpg" data-background-size="99%">
<!--<h1><font color ="blue">LORIS globally</font></h1> -->
</section>
<!-- LORIS Key features -->
<section data-background="images/loris_features.jpg">
<!--<h2><font color="0d4983">Key Features</font></h2>-->
</section>
<!-- LORIS Dashboard -->
<section data-background="images/LORIS_dashboard.png">
<h2><font color="222222">LORIS Dashboard</font></h2>
</section>
<section>
<h2><font color="12a3d8">Data flow</font></h2>
<img src="images/Data_flow.jpg">
</section>
<section data-background="images/MNI_ecosystem_paper.png" data-transition="fade" data-background-size="70%">
</section>
</section>
<!-- Projects -->
<section data-transition="convex">
<!-- NIHPD -->
<section data-transition="convex">
<img src="images/NIHPD_logo.jpg">
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/NIHPD_paper.png">
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/MRI_images_several.jpg">
</td>
<td width="30%" style="vertical-align: top">
<ul><small>
<li>Cited 295 times</li>
<li>Control data for NDAR</li>
<li>Longitudinal study (8 years)</li>
<li>532 subjects</li>
<li>8000 distinct variables</li>
<li>37000 individual assessments</li>
<li>T1, T2, PD, DTI, Spectroscopy</li>
<li>∼3TB of imaging data</li>
<li>2000 MRI acquisitions</li>
</small></ul>
</td>
</tr></table>
</section>
<!-- IBIS -->
<section data-transition="convex">
<img src="images/IBIS.png">
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/IBIS_paper.png">
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/IBIS_image.png">
</td>
<td width="30%" style="vertical-align: top">
<p><small>
<ul>
<li>Autism infant brain development</li>
<li>3000+ scans</li>
<li>700+ subjects</li>
<li>7000 distinct variables</li>
<li>150,000+ individual assessments</li>
<li>T1, T2, DTI, BOLD</li>
<li>∼5 TBs imaging data</li>
<li>Genetic/biospecimen data</li>
</ul>
</small></p>
</td>
</tr></table>
</section>
<!-- CCNA -->
<section data-transition="concave">
<table class="reveal">
<h2>CCNA</h2>
<tr>
<td width="70%" style="vertical-align: top">
<img src="images/CCNA.png">
</td>
<td width="30%" style="vertical-align: top">
<p><small>
<ul>
<li>$35 million</li><br>
<li>CIHR funded</li><br>
<li>Pan Canadian Consortium</li><br>
<li>Acquisition in June, 2016</li><br>
<li>35 collections sites</li><br>
<li>LORIS powered</li><br>
</ul>
</small></p>
</td>
</tr></table>
</section>
<!-- BigBrain -->
<section data-transition="fade">
<table class="reveal">
<h2>BigBrain</h2>
<tr>
<td width="55%" style="vertical-align: middle">
<img src="images/BigBrain.png">
</td>
<td width="45%" style="vertical-align: middle">
<img src="images/BigBrain_paper.png">
</td>
</tr></table>
</section>
<!-- QPN -->
<section data-transition="fade">
<h2>Quebec Parkinson Network</h2>
<img src="images/QPN.png" width="80%">
</section>
</section>
<!-- Data sharing -->
<section data-transition="fade">
<!-- COBIDAS -->
<section data-transition="concave">
<h2>Best practices in Data Sharing</h2>
<table class="reveal">
<tr>
<td style="vertical-align:middle">
<small style="margin:0; padding:0;"><a href="http://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=1" target="_blank">Committee on Best Practices in Data Analysis and Sharing (COBIDAS)</a></small>
</td>
<td width="20%" style="vertical-align:middle">
<img src="images/nature_neuro.jpg" style="border:0; margin:0; padding:0;">
</td>
</tr></table>
<table class="reveal">
<tr>
<td width="52%" style="vertical-align:middle">
<img src="images/COBIDAS.png">
</td>
<td width="48%" style="vertical-align:middle">
<img src="images/COBIDAS_Nature.png">
</td>
</tr></table>
</section>
<!-- NeuroImgaging Data Model (NiDM)-->
<section data-transition="fade">
<table class="reveal">
<h2>NeuroImaging Data Model</h2>
<tr>
<td width="55%" style="vertical-align: middle">
<img src="images/Nidm.png">
</td>
<td width="45%" style="vertical-align: middle">
<img src="images/NIDM_paper.png">
</td>
</tr></table>
</section>
<!-- BIDS -->
<section data-transition="fade">
<table class="reveal">
<h2>BIDS Format</h2>
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/BIDS_paper.png">
</td>
<td width="55%" style="vertical-align: middle">
<img src="images/BIDS_structure.png">
</td>
</tr></table>
</section>
</section>
<!-- Open Science -->
<section data-transition="zoom">
<!-- Open Science Cyberinfrastructure paper -->
<section>
<img src="images/Open_science_paper.png">
</section>
<section>
<h2>Cyberinfrastructure</h2>
<img src="images/Cyberinfrastructure.png">
</section>
<!-- Cybersecurity -->
<section>
<img src="images/Cybersecurity.png">
</section>
<!-- Free as in beer-->
<section data-transition="zoom">
<a href="https://www.ohbmbrainmappingblog.com/blog/free-beer-and-free-speech-a-conversation-with-samir-das-and-pierre-bellec" target="_blank"><img src="images/Free_beer.png"></a>
</section>
<!-- Stallman -->
<section data-transition="concave">
<table class="reveal">
<tr>
<td width="50%" style="vertical-align:middle">
<img src="images/Stallman.png">
<p align="center">Richard Stallman <br>Visit to the MNI<br> May 2017</p>
</td>
<td width="50%" style="vertical-align:middle">
<img <img src="images/fsf_screenshot.png">
<img src="images/Stallman_Samir.png">
</td>
</tr></table>
</section>
<!-- Open Science socials -->
<section>
<h2>The biggest challenge to Open Science:</h2>
<p>Governance: Ensuring the executive understands that Open Science is largely a technical challenge.</p>
</section>
</section>
</div>
</div>
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