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<!doctype html>
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<meta name="description" content="ReproZip examples shows how to use ReproZip, a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequent task in computational science.">
<meta name="author" content="VIDA at NYU">
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<title>ReproZip Examples</title>
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<h3 id="examples">Get to know some ReproZip use cases!</h3>
<p>This site holds some examples and use cases from different domains that showcase <a href="https://www.reprozip.org/">ReproZip</a>, an open source tool that enables full computational reproducibility and preservation! You’ll find more information about each particular example in its associated README when you click the "REPRODUCE THIS" button below. Instructions for reproducing the examples use the <a href="https://docs.reprozip.org/en/1.0.x/unpacking.html#unpack-vagrant">vagrant</a> and the <a href="https://docs.reprozip.org/en/1.0.x/unpacking.html#docker-plugin">docker</a> unpackers. However, any of the <a href="https://docs.reprozip.org/en/1.0.x/unpacking.html#unpackers">available unpackers</a> can be used.</p>
<div class="card-deck">
<div class="card">
<img class="card-img-top" src="bash-count/graph.png" alt="Bash count" class="img-fluid" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Bash Count</h4>
<p class="card-text">This is a very simple example where a bash script is used to count the number of pages of an input file.</p>
<span class="badge badge-secondary">bash</span>
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<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/bash-count" class="btn btn-primary">Reproduce this</a>
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<div class="card">
<img class="card-img-top" src="bechdel-test/median_budget.png" alt="bechdel-test" class="img-fluid" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Bechdel Test Analysis</h4>
<p class="card-text">This example replicates findings from an article in FiveThirtyEight that examines gender bias in the movie business using the Bechdel test.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/bechdel-test" class="btn btn-primary">Reproduce this</a>
</div>
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<div class="card">
<img class="card-img-top" src="brain-segmentation/median_otsu.png" alt="brain-segementation" class="img-fluid" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Brain Segmentation</h4>
<p class="card-text">A Python script that extracts brain information and mask from an input b0 image using dipy, a diffusion imaging analysis package.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/brain-segmentation" class="btn btn-primary">Reproduce this</a>
</div>
</div>
<div class="card">
<img class="card-img-top" src="bus-vis/BusVis.png" alt="busvis" class="img-fluid" height="180" width="255">
<div class="card-body">
<h4 class="card-title">BusVis: Visualization of the Konstanz Bus Transportation System</h4>
<p class="card-text">BusVis shows the fastest time and path between two bus stops in the city of Konstanz, which updates in real-time.</p>
<span class="badge badge-light">Java</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/bus-vis" class="btn btn-primary">Reproduce this</a>
</div>
</div>
</div><!-- end first card deck -->
<br/><br/>
<div class="card-deck">
<div class="card">
<img class="card-img-top" src="digits-sklearn/confusion-matrix.png" class="img-fluid" alt="digits-sklearn" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Creating and Testing a SVM Classifier</h4>
<p class="card-text">A supervised learning and classification experiment that creates and tests a SVM classifier for the digits dataset using scikit-learn.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/digits-sklearn" class="btn btn-primary">Reproduce this</a>
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<img class="card-img-top" src="ising-model/ising-model.png" class="img-fluid" alt="ising-model" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Critical Temp for the Ising Model</h4>
<p class="card-text">This experiment is a typical simulation in statistical physics, consisting of large scale Monte Carlo simulations followed by an involved statistical analysis of the results.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/ising-model" class="btn btn-primary">Reproduce this</a>
</div>
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<div class="card">
<img class="card-img-top" src="data-polygamy/data-polygamy.png" class="img-fluid" alt="data polygamy" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Data Polygamy</h4>
<p class="card-text">A paper published at SIGMOD 2016 whose plots were made reproducible using ReproZip.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/data-polygamy" class="btn btn-primary">Reproduce this</a>
</div>
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<div class="card">
<img class="card-img-top" src="django-blog/django-blog.png" class="img-fluid" alt="django" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Django Blog</h4>
<p class="card-text">A simple website built with Django that displays a list of blog posts and allows the admin to edit or post. Despite its simplicity, it represents a realistic small web application using a database (SQLite3).</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/django-blog" class="btn btn-primary">Reproduce this</a>
</div>
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</div><!-- end second card deck -->
<br/><br/>
<div class="card-deck">
<div class="card">
<img class="card-img-top" src="irish-schools/Rplots-1.png" class="img-fluid" alt="Irish Schools" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Irish National School System Plots</h4>
<p class="card-text">This example is from Nick Wolf's National School System and the Irish Language Heaney Lecture 2015, where publication-ready graphs and materials are generated from tabular data using R.</p>
<span class="badge badge-info">R</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/irish-schools" class="btn btn-primary">Reproduce this</a>
</div>
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<div class="card">
<img class="card-img-top" src="mongodb-vls/mongodb-vls.png" class="img-fluid" alt="mongodb-vls" height="180" width="255">
<div class="card-body">
<h4 class="card-title">MongoDB-VLS</h4>
<p class="card-text">MongoDB-VLS is an implementation of VLS in MongoDB. This paper from ICDE 2016 shows it enables consistent analytics without blocking incoming updates in NoSQL.</p>
<span class="badge badge-dark">nosql</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/mongodb-vls" class="btn btn-primary">Reproduce this</a>
</div>
</div>
<div class="card">
<img class="card-img-top" src="object-tracking/mot.png" class="img-fluid" alt="Card image cap" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Multiple Object Tracking (MOT)</h4>
<p class="card-text">The main goal of this experiment is to track the movement of multiple objects from an input video based on users' input.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/object-tracking" class="btn btn-primary">Reproduce this</a>
</div>
</div>
<div class="card">
<img class="card-img-top" src="digits-sklearn-opencv/photo.jpg" class="img-fluid" alt="digits-sklearn-opencv" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Predicting the Values of Hand-Written Digits</h4>
<p class="card-text">This example creates a SVM classifier for the digits dataset using scikit-learn, and predicts the values of hand-written digits of an input image.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/digits-sklearn-opencv" class="btn btn-primary">Reproduce this</a>
</div>
</div>
</div><!-- end third card deck -->
<br/><br/>
<div class="card-deck">
<div class="card">
<img class="card-img-top" src="repromatch/repromatch.png" class="img-fluid" alt="repromatch" height="180" width="255">
<div class="card-body">
<h4 class="card-title">ReproMatch</h4>
<p class="card-text">A website designed to help you find the tool that best matches your reproducibility needs. Built with Django CMS and Apache Solr for search.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/repromatch" class="btn btn-primary">Reproduce this</a>
</div>
</div>
<div class="card">
<img class="card-img-top" src="stacked-up/stacked-up.png" class="img-fluid" alt="stacked-up" height="180" width="255">
<div class="card-body">
<h4 class="card-title">Stacked Up</h4>
<p class="card-text">A website called Stacked Up, also built with Django, to explore the textbook inventory of Philadelphia public schools. All the data is stored in a PostgreSQL database.</p>
<span class="badge badge-primary">python</span>
</div>
<div class="card-footer">
<a href="https://github.com/VIDA-NYU/reprozip-examples/tree/master/stacked-up" class="btn btn-primary">Reproduce this</a>
</div>
</div>
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<p>ReproZip is under development at <a href="https://engineering.nyu.edu/" rel="noopener">NYU</a> by the <a href="https://vida.engineering.nyu.edu/"><abbr title="Visualization, Imaging, and Data Analytics">VIDA group</abbr></a>. Any questions or comments can be directed to the <a href="https://groups.google.com/a/nyu.edu/g/reprozip">ReproZip mailing list</a> or on <a href="https://github.com/VIDA-NYU/reprozip-examples">GitHub</a> via an issue.</p>
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