diff --git a/bin/MINIEX_makeInfoFile.py b/bin/MINIEX_makeInfoFile.py index 1e6e859..6499399 100755 --- a/bin/MINIEX_makeInfoFile.py +++ b/bin/MINIEX_makeInfoFile.py @@ -41,7 +41,7 @@ # Read in cluster (number) and tissue identity and merge into one string (e.g. "xylem-28") cluster_ids_df = pandas.read_csv(CLUSTER_IDS, sep='\t', header=None, names=["cluster_id", "tissue"], dtype={"cluster_id":"str", "tissue":"str"}) -cluster_ids_df["merged_cluster_name"] = cluster_ids_df['tissue'].astype(str) + '-' + cluster_ids_df.index.astype(str) +cluster_ids_df["merged_cluster_name"] = cluster_ids_df['tissue'].astype(str) + '-' + cluster_ids_df['cluster_id'].astype(str) cluster_ids_df.set_index("cluster_id", inplace=True) ################################ diff --git a/example/OUTPUTS/regulons/miniexExample_TF_info_file.tsv b/example/OUTPUTS/regulons/miniexExample_TF_info_file.tsv index cb09ff2..bf0d712 100644 --- a/example/OUTPUTS/regulons/miniexExample_TF_info_file.tsv +++ b/example/OUTPUTS/regulons/miniexExample_TF_info_file.tsv @@ -1,4 +1,4 @@ - isTF_expressed isTF_expressionRegulons isTF_TFBSRegulons isTF_finalRegulons LRC-0 LRC-1 LRC-11 LRC-12 LRC-19 LRC-2 LRC-33 LRC-38 LRC-39 QC-40 atrichoblast-29 atrichoblast-37 columella-9 cortex-13 cortex-18 cortex-28 cortex-7 dividing-20 endodermis-14 endodermis-26 endodermis-32 epidermis-15 initials-10 initials-25 pericycle-16 pericycle-21 pericycle-3 pericycle-36 pericycle-4 pericycle-8 phloem-17 phloem-31 phloem-6 procambium-22 procambium-24 procambium-35 procambium-5 trichoblast-27 trichoblast-30 xylem-23 xylem-34 + isTF_expressed isTF_expressionRegulons isTF_TFBSRegulons isTF_finalRegulons LRC-0 LRC-1 LRC-11 LRC-12 LRC-18 LRC-2 LRC-30 LRC-35 LRC-36 QC-37 atrichoblast-26 atrichoblast-34 columella-9 cortex-13 cortex-17 cortex-25 cortex-7 dividing-19 endodermis-14 endodermis-23 endodermis-29 epidermis-15 initials-10 initials-22.2 pericycle-16.0 pericycle-20 pericycle-3 pericycle-33 pericycle-4 pericycle-8 phloem-16.1 phloem-28 phloem-6 procambium-21 procambium-22.1 procambium-32 procambium-5 trichoblast-24 trichoblast-27 xylem-22.0 xylem-31 AT1G01010 0 0 0 0 AT1G01030 1 1 0 0 0.0 0.0 0.0 2.1 0.0 1.4 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.2 4.3 25.0 0.0 2.2 1.7 0.0 28.6 2.1 0.0 0.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 AT1G01060 0 0 0 0