diff --git a/DESCRIPTION b/DESCRIPTION index cfaf1a8..70ba1a7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,21 +1,21 @@ Package: scpdata Type: Package Title: Single-Cell Proteomics Data Package -Version: 1.9.2 +Version: 1.11.1 Authors@R: c(person("Christophe", "Vanderaa", - email = "christophe.vanderaa@uclouvain.be", - comment = c(ORCID = "0000-0001-7443-5427"), - role = c("aut", "cre")), + email = "christophe.vanderaa@uclouvain.be", + comment = c(ORCID = "0000-0001-7443-5427"), + role = c("aut", "cre")), person("Laurent", "Gatto", - email = "laurent.gatto@uclouvain.be", - comment = c(ORCID = "0000-0002-1520-2268"), - role = "aut")) -Description: The package disseminates mass spectrometry (MS)-based - single-cell proteomics (SCP) datasets. The data were collected - from published work and formatted using the `scp` data structure. - The data sets contain quantitative information at spectrum, - peptide and/or protein level for single cells or minute sample + email = "laurent.gatto@uclouvain.be", + comment = c(ORCID = "0000-0002-1520-2268"), + role = "aut")) +Description: The package disseminates mass spectrometry (MS)-based + single-cell proteomics (SCP) datasets. The data were collected + from published work and formatted using the `scp` data structure. + The data sets contain quantitative information at spectrum, + peptide and/or protein level for single cells or minute sample amounts. Depends: R (>= 4.2.0), @@ -35,9 +35,9 @@ Suggests: BiocCheck, rmarkdown, testthat -biocViews: - ExperimentData, - ExpressionData, +biocViews: + ExperimentData, + ExpressionData, ExperimentHub, ReproducibleResearch, MassSpectrometryData, diff --git a/NEWS.md b/NEWS.md index 1d1ac9f..72954e2 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,9 +1,10 @@ +# scpdata 1.11 -# scpdata 1.9 +## scpdata 1.11.1 -## scpdata 1.9.3 +- Added contribution vignette. -(nothing yet) +# scpdata 1.9 ## scpdata 1.9.2 @@ -37,7 +38,7 @@ - New Bioconductor 3.16 (stable) release -# scpdata 1.5 +# scpdata 1.5 ## scpdata 1.5.6 @@ -52,7 +53,7 @@ ## scpdata 1.5.3 - tests: make sure each dataset is available -- docs: don't run examples. They take too long and crash the checks. +- docs: don't run examples. They take too long and crash the checks. ## scpdata 1.5.2 @@ -78,7 +79,7 @@ ## scpdata 1.3.1 - williams2020: added 2 new datasets (need to be sent to EH) -- all: added supplementary metadata fields in `metadata.csv`. +- all: added supplementary metadata fields in `metadata.csv`. - zhu2019EL: split protein data into protein_intensity and protein_iBAQ - dou2019: modified peptide data by excluding low-quality PSMs @@ -96,8 +97,8 @@ ## scpdata 1.1.2 -- dou2019_*: Fixed duplicated data, added identification score and - probabilities data, and generated peptide data. +- dou2019_*: Fixed duplicated data, added identification score and + probabilities data, and generated peptide data. - zhu2018MCP: added protein data (intensity, LFQ and iBAQ) - zhu2018NC_*: added protein data (intensity, LFQ and iBAQ) - metadata: included additional meta fields: PreprocessingSoftware and