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incorporate O(n^2) time vectorized RNAduplex replacement for sequence pairs #89

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dave-doty opened this issue Aug 23, 2021 · 0 comments
Open

incorporate O(n^2) time vectorized RNAduplex replacement for sequence pairs #89

dave-doty opened this issue Aug 23, 2021 · 0 comments
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enhancement New feature or request

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@dave-doty
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Chris Thachuk has some extremely fast code that can check two sequences according to a simplified variant of what RNAduplex does. This should be incorporated. (which will require learning how to create Python modules from Rust.)
@dave-doty dave-doty added the enhancement New feature or request label Aug 23, 2021
@dave-doty dave-doty changed the title incorporate fast n^2 vectorized RNAduplex replacement for sequence pairs incorporate n^2 time vectorized RNAduplex replacement for sequence pairs Sep 6, 2021
@dave-doty dave-doty changed the title incorporate n^2 time vectorized RNAduplex replacement for sequence pairs incorporate O(n^2) time vectorized RNAduplex replacement for sequence pairs Sep 6, 2021
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