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The documentation is still in progress... but do not panic! If you have any question, we will be more than happy to answer it directly. Detailed information are to be added as specific sections, make sure to check them.
Panache uses a TSV file that extends BED format to allow the insertion of new information such as a presence absence matrix and functional categories. In practice, this is a 8 tabular column that stores start and stop positions of the chromosome blocks with presence/absence matrix (1/0) computed block similarity(optional), functional category (optional).
Following table is meant as an example, actual files can be find in the public folder, and detailed information are available in the Files and Formats section of the wiki
| Chrom | Start | Stop | Similar Blocks | Function | A | B | C |
|---|---|---|---|---|---|---|---|
| chr1 | 56 | 78 | chr2:74:96 | GO:0009819 | 0 | 0 | 1 |
| chr1 | 210 | 356 | - | - | 1 | 0 | 1 |
| chr2 | 500 | 4569 | chr4:120:133 | - | 1 | 1 | 1 |
Panache accepts a classical GFF3 format with gene structural annotation.
In the case you have a graph dataset at GFA, Graph can be linearized with BioGraph
Panache relies fully on javascript and once deployed on a server, it can be embedded easily in a existing application using an iframe.