pancancer_config.json

{
  "youxia":
  {
    "sensu_username":"admin",
    "sensu_password":"seqware",
    "sensu_ip_address":"localhost",
    "sensu_port":"4567",
    "managed_tag":"FLEET_NAME",
    "aws":
    {
      "aws_ssh_key":"/path/to/key.pem",
      "aws_key_name":"key",
      "region":"us-east-1",
      "zone":[
          "us-east-1a","us-east-1b","us-east-1c","us-east-1d","us-east-1e"
        ],
      "ami_image":"ami-123456",
      "instance_type":"m1.xlarge",
      "security_group":"launch-wizard-123",
      "product":"Linux/UNIX",
      "disable_sensu_server":true
    },
    "openstack":
    {
      "openstack_username":"<tenant>:<username>",
      "openstack_password":"password",
      "openstack_endpoint":"http://10.5.73.21:5000/v2.0",
      "openstack_key_name":"key",
      "openstack_ssh_key":"/path/to/key.key",
      "openstack_region":"RegionOne",
      "flavor":"m1.xlarge",
      "min_cores":4,
      "min_ram":16384,
      "image_id":"some_image_id",
      "security_group":"default",
      "network_id":"some_network_id",
      "arbitrary_wait":200000
    }
  },
  "params":
  {
    "SENSU_SERVER_IP_ADDRESS": "10.0.26.25",
    "aws_key": "<AWS KEY>",
    "aws_secret_key": "<AWS SECRET KEY>",
    "seqware_version": "1.1.1",
    "workflow_name": "HelloWorld",
    "http_workflows": {
      "DEWrapper": {
        "name": "Workflow_Bundle_DEWrapperWorkflow_1.0.2_SeqWare_1.1.0",
        "url": "http://s3.amazonaws.com/oicr.workflow.bundles/released-bundles/Workflow_Bundle_DEWrapperWorkflow_1.0.2_SeqWare_1.1.0.zip"
      },
      "HelloWorld": {
        "name": "Workflow_Bundle_HelloWorld_1.0-SNAPSHOT_SeqWare_1.1.0",
        "url":"http://s3.amazonaws.com/oicr.workflow.bundles/released-bundles/Workflow_Bundle_HelloWorld_1.0-SNAPSHOT_SeqWare_1.1.0.zip"
      }
    },
    "s3_workflows": {
      "S3Workflow": {
        "name":"Workflow_Bundle_OnlyAvailableFromS3_1.0_SeqWare_1.1.0",
        "url":"s3://some.private.bucket/Workflow_Bundle_OnlyAvailableFromS3_1.0_SeqWare_1.1.0.zip"
      }
    },
    "containers": {
      "seqware_whitestar": {
        "name": "seqware_whitestar",
        "image_name": "seqware/seqware_whitestar:{{ seqware_version }}"
      },
      "pcawg-delly-workflow": {
        "name":"pcawg-delly-workflow",
        "image_name": "pancancer/pcawg-delly-workflow:1.0"
      },
      "pancancer_upload_download": {
        "name": "pancancer_upload_download",
        "image_name": "pancancer/pancancer_upload_download:1.1"
      }
    },
    "s3_containers": {
      "some_s3_container": {
        "name": "some_s3_container_1.2.3",
        "url": "s3://private.container.bucket/some_s3_container_1.2.3.tar"
      }
    },
    "http_containers": {
      "some_other_container": {
        "name":"some_other_container",
        "url":"http://www.some-other-organization.com/some_other_container.tar"
      }
    },
    "install_workflow": "true",
    "test_workflow": "true",
    "queueHost": "10.0.26.25",
    "queueName": "pancancer_arch_3",
    "lvm_device_whitelist": [
        "/dev/xvdb","/dev/xvdc","/dev/xvdd","/dev/xvde"
      ],
    "single_node_lvm": true,
    "pancancer_arch3_version": "1.1-alpha.5",
    "seqware_engine":"whitestar-parallel",
    "seqware_use_custom_settings":false,
    "azure": false
  },
  "consonance":
  {
    "rabbit":
    {
      "rabbitMQHost":"localhost",
      "rabbitMQUser":"queue_user",
      "rabbitMQPass":"queue",
      "rabbitMQQueueName":"pancancer_arch_3"
    },
    "database":
    {
      "postgresHost":"127.0.0.1",
      "postgresUser":"queue_user",
      "postgresPass":"queue",
      "postgresDBName":"queue_status"
    },
    "generator":
    {
      "results":"results.txt",
      "check_previous_job_hash":true
    },
    "report":
    {
      "namespace":"pipboy"
    },
    "coordinator":
    {
      "max_seconds_before_lost":3600
    },
    "provision":
    {
      "max_running_containers":1,
      "youxia_deployer_parameters":"--max-spot-price 0.001 --batch-size 3 --ansible-playbook /home/ubuntu/architecture-setup/container-host-bag/install.yml -e /home/ubuntu/params.json --server-tag-file server-tags.json",
      "youxia_reaper_parameters":"--test"
    }
  }
}