diff --git a/.gitignore b/.gitignore index 27b475f83..d317ca7c5 100644 --- a/.gitignore +++ b/.gitignore @@ -63,6 +63,9 @@ coverage.xml .hypothesis/ .pytest_cache/ +# Model diagrams from graphviz +*.dot + # Translations *.mo *.pot @@ -152,6 +155,9 @@ node_modules .DS_Store .idea/ +# Temporary Helm and k8s deployment files +charts/values/ + # The media folder contents media/* !media/.gitkeep diff --git a/apps/admin.py b/apps/admin.py index 7a8416a65..bd11fe1d2 100644 --- a/apps/admin.py +++ b/apps/admin.py @@ -103,7 +103,7 @@ def deploy_resources(self, request, queryset): for instance in queryset: instance.set_k8s_values() - instance.url = get_URI(instance.k8s_values) + instance.url = get_URI(instance) instance.save(update_fields=["k8s_values", "url"]) deploy_resource.delay(instance.serialize()) diff --git a/apps/forms/base.py b/apps/forms/base.py index aa5133bae..a6c748982 100644 --- a/apps/forms/base.py +++ b/apps/forms/base.py @@ -153,7 +153,7 @@ def _setup_form_fields(self): # Handle Volume field volume_queryset = ( - VolumeInstance.objects.filter(project__pk=self.project_pk) + VolumeInstance.objects.filter(project__pk=self.project_pk).exclude(app_status__status="Deleted") if self.project_pk else VolumeInstance.objects.none() ) diff --git a/apps/forms/custom.py b/apps/forms/custom.py index 748a2a9b0..4cea0566a 100644 --- a/apps/forms/custom.py +++ b/apps/forms/custom.py @@ -1,5 +1,9 @@ +from crispy_forms.bootstrap import Accordion, AccordionGroup, PrependedText from crispy_forms.layout import HTML, Div, Field, Layout, MultiField from django import forms +from django.core.exceptions import ValidationError +from django.urls import reverse +from django.utils.safestring import mark_safe from apps.forms.base import AppBaseForm from apps.forms.field.common import SRVCommonDivField @@ -14,12 +18,23 @@ class CustomAppForm(AppBaseForm): port = forms.IntegerField(min_value=3000, max_value=9999, required=True) image = forms.CharField(max_length=255, required=True) path = forms.CharField(max_length=255, required=False) + default_url_subpath = forms.CharField(max_length=255, required=False, label="Custom URL subpath") def _setup_form_fields(self): # Handle Volume field super()._setup_form_fields() self.fields["volume"].initial = None + self.fields["default_url_subpath"].widget.attrs.update({"class": "textinput form-control"}) + self.fields["default_url_subpath"].help_text = "Specify a non-default start URL if your app requires that." + apps_url = reverse("portal:apps") + self.fields["default_url_subpath"].bottom_help_text = mark_safe( + ( + f"Note: This changes the URL connected to the Open button for an app" + f" on the Serve Apps & Models page." + ) + ) + def _setup_form_helper(self): super()._setup_form_helper() @@ -39,7 +54,18 @@ def _setup_form_helper(self): placeholder="Describe why you want to make the app accessible only via a link", ), SRVCommonDivField("port", placeholder="8000"), - SRVCommonDivField("image"), + SRVCommonDivField("image", placeholder="e.g. docker.io/username/image-name:image-tag"), + Accordion( + AccordionGroup( + "Advanced settings", + PrependedText( + "default_url_subpath", + mark_safe("Subdomain/"), + template="apps/partials/srv_prepend_append_input_group.html", + ), + active=False, + ), + ), css_class="card-body", ) self.helper.layout = Layout(body, self.footer) @@ -81,6 +107,7 @@ class Meta: "port", "image", "tags", + "default_url_subpath", ] labels = { "note_on_linkonly_privacy": "Reason for choosing the link only option", diff --git a/apps/helpers.py b/apps/helpers.py index f9b7b3630..2b742be6c 100644 --- a/apps/helpers.py +++ b/apps/helpers.py @@ -2,7 +2,8 @@ from enum import Enum from typing import Optional -from django.core.exceptions import ObjectDoesNotExist +import regex as re +from django.core.exceptions import ObjectDoesNotExist, ValidationError from django.db import transaction from apps.types_.subdomain import SubdomainCandidateName, SubdomainTuple @@ -221,12 +222,15 @@ def update_status_time(status_object, status_ts, event_msg=None): status_object.save(update_fields=["time", "info"]) -def get_URI(values): +def get_URI(instance): + values = instance.k8s_values # Subdomain is empty if app is already deleted subdomain = values["subdomain"] if "subdomain" in values else "" URI = f"https://{subdomain}.{values['global']['domain']}" - URI = URI.strip("/") + if hasattr(instance, "default_url_subpath") and instance.default_url_subpath != "": + URI = URI + "/" + instance.default_url_subpath + logger.info("Modified URI by adding custom default url for the custom app: %s", URI) return URI @@ -261,7 +265,16 @@ def create_instance_from_form(form, project, app_slug, app_id=None): do_deploy = True else: # Only re-deploy existing apps if one of the following fields was changed: - redeployment_fields = ["subdomain", "volume", "path", "flavor", "port", "image", "access", "shiny_site_dir"] + redeployment_fields = [ + "subdomain", + "volume", + "path", + "flavor", + "port", + "image", + "access", + "shiny_site_dir", + ] logger.debug(f"An existing app has changed. The changed form fields: {form.changed_data}") # Because not all forms contain all fields, we check if the supposedly changed field @@ -357,5 +370,27 @@ def save_instance_and_related_data(instance, form): instance.save() form.save_m2m() instance.set_k8s_values() - instance.url = get_URI(instance.k8s_values) + instance.url = get_URI(instance) instance.save(update_fields=["k8s_values", "url"]) + + +def validate_path_k8s_label_compatible(candidate: str) -> None: + """ + Validates to be compatible with k8s labels specification. + See: https://kubernetes.io/docs/concepts/overview/working-with-objects/labels/#syntax-and-character-set + The RegexValidator will raise a ValidationError if the input does not match the regular expression. + It is up to the caller to handle the raised exception if desired. + """ + error_message = ( + "Please provide a valid path. " + "It can be empty. " + "Otherwise, it must be 63 characters or less. " + " It must begin and end with an alphanumeric character (a-z, or 0-9, or A-Z)." + " It could contain dashes ( - ), underscores ( _ ), dots ( . ), " + "and alphanumerics." + ) + + pattern = r"^(?:[a-zA-Z0-9](?:[a-zA-Z0-9._-]{0,61}[a-zA-Z0-9])?)?$" + + if not re.match(pattern, candidate): + raise ValidationError(error_message) diff --git a/apps/migrations/0018_customappinstance_default_url_subpath.py b/apps/migrations/0018_customappinstance_default_url_subpath.py new file mode 100644 index 000000000..9b3a242a8 --- /dev/null +++ b/apps/migrations/0018_customappinstance_default_url_subpath.py @@ -0,0 +1,23 @@ +# Generated by Django 5.1.1 on 2024-11-19 13:27 + +import apps.models.app_types.custom.custom +from django.db import migrations, models + + +class Migration(migrations.Migration): + dependencies = [ + ("apps", "0017_alter_streamlitinstance_port"), + ] + + operations = [ + migrations.AddField( + model_name="customappinstance", + name="default_url_subpath", + field=models.CharField( + blank=True, + default="", + max_length=255, + validators=[apps.models.app_types.custom.custom.validate_default_url_subpath], + ), + ), + ] diff --git a/apps/migrations/0019_alter_shinyinstance_shiny_site_dir.py b/apps/migrations/0019_alter_shinyinstance_shiny_site_dir.py new file mode 100644 index 000000000..96eeb0e15 --- /dev/null +++ b/apps/migrations/0019_alter_shinyinstance_shiny_site_dir.py @@ -0,0 +1,20 @@ +# Generated by Django 5.1.1 on 2024-11-27 12:47 + +import apps.models.app_types.shiny +from django.db import migrations, models + + +class Migration(migrations.Migration): + dependencies = [ + ("apps", "0018_customappinstance_default_url_subpath"), + ] + + operations = [ + migrations.AlterField( + model_name="shinyinstance", + name="shiny_site_dir", + field=models.CharField( + blank=True, default="", max_length=255, validators=[apps.helpers.validate_path_k8s_label_compatible] + ), + ), + ] diff --git a/apps/migrations/0020_alter_jupyterinstance_environment_and_more.py b/apps/migrations/0020_alter_jupyterinstance_environment_and_more.py new file mode 100644 index 000000000..af49c76d7 --- /dev/null +++ b/apps/migrations/0020_alter_jupyterinstance_environment_and_more.py @@ -0,0 +1,28 @@ +# Generated by Django 5.1.1 on 2024-12-12 10:06 + +import django.db.models.deletion +from django.db import migrations, models + + +class Migration(migrations.Migration): + dependencies = [ + ("apps", "0019_alter_shinyinstance_shiny_site_dir"), + ("projects", "0008_project_deleted_on"), + ] + + operations = [ + migrations.AlterField( + model_name="jupyterinstance", + name="environment", + field=models.ForeignKey( + blank=True, null=True, on_delete=django.db.models.deletion.RESTRICT, to="projects.environment" + ), + ), + migrations.AlterField( + model_name="rstudioinstance", + name="environment", + field=models.ForeignKey( + blank=True, null=True, on_delete=django.db.models.deletion.RESTRICT, to="projects.environment" + ), + ), + ] diff --git a/apps/models/app_types/custom/custom.py b/apps/models/app_types/custom/custom.py index ba4ae6fb0..ea8777b61 100644 --- a/apps/models/app_types/custom/custom.py +++ b/apps/models/app_types/custom/custom.py @@ -1,11 +1,40 @@ +import regex as re +from django.core.exceptions import ValidationError +from django.db import models + from apps.models import AppInstanceManager, BaseAppInstance from .base import AbstractCustomAppInstance +def validate_default_url_subpath(candidate): + """ + Validates a custom default url path addition. + The RegexValidator will raise a ValidationError if the input does not match the regular expression. + It is up to the caller to handle the raised exception if desired. + """ + error_message = ( + "Your custom URL subpath is not valid, please correct it. " + "It must be 1-53 characters long." + " It can contain only Unicode letters, digits, hyphens" + " ( - ), forward slashes ( / ), and underscores ( _ )." + " It cannot start or end with a hyphen ( - ) and " + "cannot start with a forward slash ( / )." + " It cannot contain consecutive forward slashes ( // )." + ) + + pattern = r"^(?!-)(?!/)(?!.*//)[\p{Letter}\p{Mark}0-9-/_]{1,53}(? tuple[str | None, str | None]: + """ + Executes a Helm delete command. + """ command = f"helm uninstall {release_name} --namespace {namespace} --wait" # Execute the command try: @@ -120,24 +122,128 @@ def helm_delete(release_name, namespace="default"): return e.stdout, e.stderr +@shared_task +def helm_template( + chart: str, values_file: str, namespace: str = "default", version: str = None +) -> tuple[str | None, str | None]: + """ + Executes a Helm template command. + """ + command = f"helm template tmp-release-name {chart} -f {values_file} --namespace {namespace}" + + # Append version if deploying via ghcr + if version: + command += f" --version {version} --repository-cache /app/charts/.cache/helm/repository" + + # Execute the command + try: + result = subprocess.run(command.split(" "), check=True, text=True, capture_output=True) + return result.stdout, None + except subprocess.CalledProcessError as e: + return e.stdout, e.stderr + + +@shared_task +def helm_lint(chart: str, values_file: str, namespace: str) -> tuple[str | None, str | None]: + """ + Executes a Helm lint command. + """ + command = f"helm lint {chart} -f {values_file} --namespace {namespace}" + # Execute the command + try: + result = subprocess.run(command.split(" "), check=True, text=True, capture_output=True) + return result.stdout, None + except subprocess.CalledProcessError as e: + return e.stdout, e.stderr + + +@shared_task +def _kubectl_apply_dry(deployment_file: str, target_strategy: str = "client") -> tuple[str | None, str | None]: + """ + Executes a kubectl apply --dry-run command. + NOTE: This does not appear to be working, but kept for continued testing. + """ + command = f"kubectl apply --dry-run={target_strategy} -f {deployment_file}" + # Execute the command + try: + result = subprocess.check_output(command, shell=True) + # result = subprocess.run(command.split(" "), check=True, text=True, capture_output=True) + return result.stdout, None + except subprocess.CalledProcessError as e: + return e.stdout, e.stderr + + +def get_manifest_yaml(release_name: str, namespace: str = "default") -> tuple[str | None, str | None]: + command = f"helm get manifest {release_name} --namespace {namespace}" + # Execute the command + logger.debug(f"Executing command: {command}") + try: + result = subprocess.run(command.split(" "), check=True, text=True, capture_output=True) + return result.stdout, None + except subprocess.CalledProcessError as e: + return e.stdout, e.stderr + + @shared_task @transaction.atomic def deploy_resource(serialized_instance): instance = deserialize(serialized_instance) logger.info("Deploying resource for instance %s", instance) values = instance.k8s_values + release = values["subdomain"] if "ghcr" in instance.chart: version = instance.chart.split(":")[-1] chart = "oci://" + instance.chart.split(":")[0] else: version = None chart = instance.chart + + # Use a KubernetesDeploymentManifest to manage the manifest validation and files + from apps.types_.kubernetes_deployment_manifest import KubernetesDeploymentManifest + + kdm = KubernetesDeploymentManifest() + # Save helm values file for internal reference - values_file = f"charts/values/{str(uuid.uuid4())}.yaml" + values_file, _ = kdm.get_filepaths() with open(values_file, "w") as f: f.write(yaml.dump(values)) - output, error = helm_install(values["subdomain"], chart, values["namespace"], values_file, version) + valid_deployment = True + deployment_file = None + + # In development, also generate and validate the k8s deployment manifest + if settings.DEBUG: + logger.debug(f"Generating and validating k8s deployment yaml for release {release} before deployment.") + + output, error = kdm.generate_manifest_yaml_from_template( + chart, values_file, values["namespace"], version, save_to_file=True + ) + + _, deployment_file = kdm.get_filepaths() + + # Validate the manifest yaml documents + is_valid, validation_output, _ = kdm.validate_manifest(output) + + if is_valid: + logger.debug(f"The deployment manifest file is valid for release {release}") + + # Also validate the kubernetes-pod-patches section + kpp_data = kdm.extract_kubernetes_pod_patches_from_manifest(output) + + if kpp_data: + is_valid, message, _ = kdm.validate_kubernetes_pod_patches_yaml(kpp_data) + + if not is_valid: + logger.debug(f"The kubernetes-pod-patches section is invalid for release {release}. {message}") + valid_deployment = False + else: + valid_deployment = False + + if not valid_deployment: + logger.warning(f"The deployment manifest file is INVALID for release {release}. {validation_output}") + + # Install the app using Helm install + output, error = helm_install(release, chart, values["namespace"], values_file, version) success = not error helm_info = {"success": success, "info": {"stdout": output, "stderr": error}} @@ -148,7 +254,17 @@ def deploy_resource(serialized_instance): instance.app_status.save() instance.save() - subprocess.run(["rm", "-f", values_file]) + # In development, also generate and validate the k8s deployment manifest + if settings.DEBUG: + # Previously, we generated and validated the deployment after creation + # output, error = get_manifest_yaml(release) + pass + + if valid_deployment: + # If valid, then delete both the values and deployment files (if exists) + subprocess.run(["rm", "-f", values_file]) + if deployment_file: + subprocess.run(["rm", "-f", deployment_file]) @shared_task @@ -163,7 +279,6 @@ def delete_resource(serialized_instance): if success: if instance.app.slug in ("volumeK8s", "netpolicy"): instance.app_status.status = "Deleted" - instance.deleted_on = datetime.now() else: instance.app_status.status = "Deleting..." else: diff --git a/apps/tests/test_delete_app_view.py b/apps/tests/test_delete_app_view.py index 56e237bb9..3e7998fce 100644 --- a/apps/tests/test_delete_app_view.py +++ b/apps/tests/test_delete_app_view.py @@ -79,5 +79,6 @@ def test_user_can_delete_true(self): self.app_instance = JupyterInstance.objects.get(name="test_app_instance_public") self.assertEqual("private", self.app_instance.access) + self.assertIsNotNone(self.app_instance.deleted_on) mock_task.assert_called_once() diff --git a/apps/tests/test_forms.py b/apps/tests/test_forms.py index f0ae6cfa7..17d883743 100644 --- a/apps/tests/test_forms.py +++ b/apps/tests/test_forms.py @@ -1,9 +1,13 @@ +import pytest from django.contrib.auth import get_user_model +from django.core.exceptions import ValidationError from django.template import Context, Template from django.test import TestCase from apps.forms import CustomAppForm +from apps.helpers import validate_path_k8s_label_compatible from apps.models import Apps, AppStatus, Subdomain, VolumeInstance +from apps.models.app_types.custom.custom import validate_default_url_subpath from projects.models import Flavor, Project User = get_user_model() @@ -44,6 +48,7 @@ def setUp(self): "port": 8000, "image": "ghcr.io/scilifelabdatacentre/image:tag", "tags": ["tag1", "tag2", "tag3"], + "default_url_subpath": "valid-default_url_subpath/", } def test_form_valid_data(self): @@ -192,3 +197,115 @@ def test_form_rendering(self): self.assertIn('value="private"', rendered_form) self.assertIn('value="link"', rendered_form) self.assertIn('value="public"', rendered_form) + + +invalid_default_url_subpath_list = [ + "invalid space", + 'invalid_"_double_quote', + "invalid_<_less_than_sign", + "invalid_\\_backslash", + "invalid_|_pipe", + "invalid_^_caret", + "invalid_{_left_curly_brace", + "invalid_?_question_mark", +] + +valid_default_url_subpath_list = [ + "valid_ÄÄ_unicode_charecters", + "valid_aa/_forward_slash", + "valid_____underscore", + "_aa/bb/c_format", + "valid_-_hiphen", + "_ad-frt/fgh_cd_", + "ÅÄaad1234", +] + + +@pytest.mark.parametrize("valid_default_url_subpath", valid_default_url_subpath_list) +def test_valid_default_url_subpath(valid_default_url_subpath): + valid_check = True + try: + validate_default_url_subpath(valid_default_url_subpath) + except ValidationError: + valid_check = False + + assert valid_check + + +@pytest.mark.parametrize("invalid_default_url_subpath", invalid_default_url_subpath_list) +def test_invalid_default_url_subpath(invalid_default_url_subpath): + valid_check = True + try: + validate_default_url_subpath(invalid_default_url_subpath) + except ValidationError: + valid_check = False + + assert not valid_check + + +invalid_shiny_site_dir_list = [ + "-invalidStart", # Starts with a non-alphanumeric character + "invalidEnd-", # Ends with a non-alphanumeric character + ".dotStart", # Starts with a dot + "dotEnd.", # Ends with a dot + "_underscoreStart", # Starts with an underscore + "underscoreEnd_", # Ends with an underscore + "label with spaces", # Contains spaces + "label@value", # Contains an invalid character (@) + "too_long_label_with_more_than_sixty_three_characters__1234567890", # Exceeds 63 characters + "just-dashes-", # Ends with a dash + "123#", # Contains an invalid character (#) + ".....", # Only contains dots + "-a", # Starts with a dash + "_a_", # Starts and ends with underscores + " ", # Contains only whitespace +] + +valid_shiny_site_dir_list = [ + "", # Empty string is allowed + "a", # Single alphanumeric character + "validLabel", # Alphanumeric characters only + "label-123", # Contains a dash + "label_with_underscores", # Contains underscores + "label.with.dots", # Contains dots + "abc-def_ghi.jkl", # Contains all allowed special characters + "label1", # Ends with a number + "1stLabel", # Starts with a number + "example-label", # Simple example with a dash + "nested.label.value", # Dots between words + "underscore_ending_label", # Underscore in the middle + "valid-value-0123", # Contains numbers and special characters + "long-valid-label-abcdefg-hijklmn-opqrstuv-wxyz", # Long but within 63 characters + "labelvalue123456789", # Combination of letters and numbers + "consecutive-dashes--allowed", # Contains consecutive dashes + "consecutive_underscores__allowed", # Contains consecutive underscores + "dots..in..between", # Contains consecutive dots + "mixed__--..label", # Contains a mix of consecutive allowed characters + "label---with---many---dashes", # Multiple consecutive dashes in different parts + "label..with..dots", # Multiple consecutive dots in between + "valid_--..mix_12", # Combination of numbers, letters, and allowed characters + "simple.label-value_1-2-3", # Mixed with numbers, dots, underscores, and dashes + "complex__label..value--mixed", # A complex mix with all allowed characters in a consecutive manner +] + + +@pytest.mark.parametrize("valid_shiny_site_dir", valid_shiny_site_dir_list) +def test_valid_shiny_site_dir(valid_shiny_site_dir): + valid_check = True + try: + validate_path_k8s_label_compatible(valid_shiny_site_dir) + except ValidationError: + valid_check = False + + assert valid_check + + +@pytest.mark.parametrize("invalid_shiny_site_dir", invalid_shiny_site_dir_list) +def test_invalid_shiny_site_dir(invalid_shiny_site_dir): + valid_check = True + try: + validate_path_k8s_label_compatible(invalid_shiny_site_dir) + except ValidationError: + valid_check = False + + assert not valid_check diff --git a/apps/tests/test_kubernetes_deployment_manifest.py b/apps/tests/test_kubernetes_deployment_manifest.py new file mode 100644 index 000000000..3ba96075b --- /dev/null +++ b/apps/tests/test_kubernetes_deployment_manifest.py @@ -0,0 +1,566 @@ +from pathlib import Path + +from django.test import TestCase + +from studio.celery import app + +from ..types_.kubernetes_deployment_manifest import KubernetesDeploymentManifest + + +class ValidKubernetesDeploymentManifestTestCase(TestCase): + """Test case for a valid Kubernetes deployment.""" + + DEPLOYMENT_ID = "unittest-valid" + + VALUES_DATA = r""" + appconfig: + allowContainerReuse: false + image: ghcr.io/somerepo/shiny:v1 + minimumSeatsAvailable: 1 + path: / + port: 3839 + proxycontainerwaittime: 20000 + proxyheartbeatrate: 10000 + proxyheartbeattimeout: 60000 + seatsPerContainer: 1 + site_dir: /srv/shiny-server/ + appname: r9d95bb4a + apps: + volumeK8s: {} + flavor: + limits: + cpu: 2000m + ephemeral-storage: 5000Mi + memory: 4Gi + requests: + cpu: 500m + ephemeral-storage: 100Mi + memory: 1Gi + global: + auth_domain: 127.0.0.1 + domain: studio.127.0.0.1.nip.io + protocol: http + name: Shiny test case 105 + namespace: default + permission: project + project: + name: dp 241112 + slug: dp-241112-ono + release: r9d95bb4a + service: + name: r9d95bb4a-shinyproxyapp + storageClass: local-path + subdomain: r9d95bb4a + """ + + def setUp(self) -> None: + # Execute any Celery tasks synchronously + app.conf.update(CELERY_ALWAYS_EAGER=True) + + self.kdm = KubernetesDeploymentManifest(override_deployment_id=self.DEPLOYMENT_ID) + self.kdm.save_as_values_file(self.VALUES_DATA) + + # Verify that the file exists + from pathlib import Path + + values_file, _ = self.kdm.get_filepaths() + self.assertTrue(Path(values_file).is_file()) + + """ + Test method get_deployment_id + """ + + def test_get_deployment_id(self): + actual = self.kdm.get_deployment_id() + + self.assertIsNotNone(actual) + self.assertEqual(type(actual), str) + self.assertEqual(actual, self.DEPLOYMENT_ID) + + """ + Test method generate_manifest_yaml_from_template without saving to a file. + """ + + def test_generate_manifest_yaml_from_template(self): + chart = "oci://ghcr.io/scilifelabdatacentre/serve-charts/shinyproxy" + values_file, _ = self.kdm.get_filepaths() + namespace = "default" + version = "1.4.2" + + output, error = self.kdm.generate_manifest_yaml_from_template( + chart, values_file, namespace, version, save_to_file=False + ) + + self.assertIsNone(error) + self.assertIsNotNone(output) + self.assertEqual(type(output), str) + self.assertIn("apiVersion: v1", output) + + """ + Test method validate_manifest. + This first runs generate manifest yaml to have manifest to validate. + It runs everything in memory without creating files (except for the values file). + """ + + def test_validate_manifest(self): + # First generate the manifest yaml + chart = "oci://ghcr.io/scilifelabdatacentre/serve-charts/shinyproxy" + values_file, _ = self.kdm.get_filepaths() + namespace = "default" + version = "1.4.2" + + output, error = self.kdm.generate_manifest_yaml_from_template( + chart, values_file, namespace, version, save_to_file=False + ) + + self.assertIsNone(error) + self.assertIsNotNone(output) + self.assertEqual(type(output), str) + self.assertIn("apiVersion: v1", output) + + # Validate the manifest documents + is_valid, output, _ = self.kdm.validate_manifest(output) + + if not is_valid: + print(output) + + self.assertTrue(is_valid) + + """ + Test method extract_kubernetes_pod_patches_from_manifest + """ + + def test_extract_kubernetes_pod_patches_from_manifest(self): + # First generate the manifest yaml + chart = "oci://ghcr.io/scilifelabdatacentre/serve-charts/shinyproxy" + values_file, _ = self.kdm.get_filepaths() + namespace = "default" + version = "1.4.2" + + output, error = self.kdm.generate_manifest_yaml_from_template( + chart, values_file, namespace, version, save_to_file=False + ) + + self.assertIsNone(error) + self.assertIsNotNone(output) + + # Then extract the kubernetes-pod-patches section + actual = self.kdm.extract_kubernetes_pod_patches_from_manifest(output) + + self.assertIsNotNone(actual, f"The manifest input was: {output}") + self.assertEqual(type(actual), str, f"The returned data is {actual}") + self.assertTrue(actual.startswith("- op: add"), f"The returned text is {actual}") + self.assertTrue(actual.endswith("name: tmp-release-name-shiny-configmap"), f"Text is:{actual}") + self.assertGreater(len(actual), 500) + self.assertLess(len(actual), 1000) + + """ + Test method validate_kubernetes_pod_patches_yaml + """ + + def test_validate_kubernetes_pod_patches_yaml(self): + kpp_text = r""" + - op: add + path: /spec/securityContext + value: + runAsUser: 999 + runAsGroup: 999 + runAsNonRoot: true + allowPrivilegeEscalation: false + privileged: false + - op: add + path: /spec/volumes + value: + - name: tmp-release-name-shiny-configmap + configMap: + name: tmp-release-name-shiny-configmap + items: + - key: shiny-server.conf + path: shiny-server.conf + - op: add + path: /spec/containers/0/volumeMounts + value: + - mountPath: /etc/shiny-server/shiny-server.conf + subPath: shiny-server.conf + name: tmp-release-name-shiny-configmap +""" + + is_valid, output, _ = self.kdm.validate_kubernetes_pod_patches_yaml(kpp_text) + + self.assertTrue(is_valid, f"The input should be valid. {output}") + self.assertIsNone(output) + + """ + Test method get_filepaths + """ + + def test_get_file_paths(self): + values_file, deployment_file = self.kdm.get_filepaths() + + # Verify the values filepath + self.assertIsNotNone(values_file) + self.assertEqual(type(values_file), str) + self.assertIn(".yaml", values_file) + + # Verify the deployment filepath + self.assertIsNotNone(deployment_file) + self.assertEqual(type(deployment_file), str) + self.assertIn("_deployment.yaml", deployment_file) + + +class BasicKubernetesDeploymentManifestTestCase(TestCase): + """Test the basic functions of a Kubernetes deployment object.""" + + def setUp(self) -> None: + # Execute any Celery tasks synchronously + app.conf.update(CELERY_ALWAYS_EAGER=True) + + self.kdm = KubernetesDeploymentManifest() + + """ + Test method get_deployment_id + """ + + def test_get_deployment_id(self): + actual = self.kdm.get_deployment_id() + + self.assertIsNotNone(actual) + self.assertEqual(type(actual), str) + self.assertEqual(len(actual), 52) + + """ + Test method check_helm_version + """ + + def test_check_helm_version(self): + actual = self.kdm.check_helm_version() + + self.assertIsNotNone(actual) + self.assertEqual(type(actual), tuple) + self.assertIn("version.BuildInfo", str(actual)) + + +class ValidateExistingKubernetesDeploymentManifestTestCase(TestCase): + """Validate any existing deployment files in the charts/values directory.""" + + def test_validate_manifests(self): + deployment_files = list(Path("charts/values").glob("*_deployment.yaml")) + + print(f"Nr of manifest files to validate: {len(deployment_files)}") + + for file in deployment_files: + f = open(file, "r") + manifest_data = f.read() + + kdm = KubernetesDeploymentManifest() + + # Validate the manifest documents + print(f"Validating deployment file {file}") + is_valid, output, _ = kdm.validate_manifest(manifest_data) + + if not is_valid: + print(output) + + if "invalid" in file.name: + # Files named with invalid in the filename as expected to be invalid + self.assertFalse(is_valid) + else: + self.assertTrue(is_valid) + + +class InvalidKubernetesDeploymentManifestTestCase(TestCase): + """Test case for an INVALID Kubernetes deployment.""" + + DEPLOYMENT_ID = "unittest-invalid" + + DEPLOYMENT_DATA = r""" +--- +# Source: shinyproxy/templates/configmap.yaml +apiVersion: v1 +kind: ConfigMap +metadata: +name: r9d95bb4a-shinyproxy-configmap +labels: + helm.sh/chart: shinyproxy-1.4.2 + app.kubernetes.io/name: shinyproxy + app.kubernetes.io/instance: r9d95bb4a + app.kubernetes.io/version: "0.1" + app.kubernetes.io/managed-by: Helm + +data: +application.yml: | + management: + server: + port: 9091 + server: + secure-cookies: true + proxy: + authentication: none + container-backend: kubernetes + heartbeat-rate: 10000 + heartbeat-timeout: 60000 + container-wait-time: 20000 + kubernetes: + internal-networking: true + namespace: default + image-pull-policy: IfNotPresent + hide-navbar: true + landing-page: /app/r9d95bb4a + livenessProbe: {} + logo-url: https://www.openanalytics.eu/shinyproxy/logo.png + port: 8080 + readinessProbe: {} + same-site-cookie: None + specs: + - container-cmd: + - /usr/bin/shiny-server + container-cpu-limit: 2000m + container-cpu-request: 500m + container-image: ghcr.io/somerepo/shiny:v1 + container-memory-limit: 4Gi + container-memory-request: 1Gi + port: 3839 + id: r9d95bb4a + display-name: + description: + minimum-seats-available: 1 + seats-per-container: 1 + allow-container-re-use: false + labels: + sp.instance: r9d95bb4a + allow-internet-egress: "true" + shinyproxy-app: r9d95bb4a + kubernetes-pod-patches: | + - op: add + path: /spec/securityContext + value:BAD-HERE + runAsUser: 999 + runAsGroup: 999 + runAsNonRoot: true + allowPrivilegeEscalation: false + privileged: false + - op: add + path: /spec/volumes + value: + - name: r9d95bb4a-shiny-configmap + configMap: + name: r9d95bb4a-shiny-configmap + items: + - key: shiny-server.conf + path: shiny-server.conf + - op: add + path: /spec/containers/0/volumeMounts + value: + - mountPath: /etc/shiny-server/shiny-server.conf + subPath: shiny-server.conf + name: r9d95bb4a-shiny-configmap + + title: Serve Shiny Proxy +--- +# Source: shinyproxy/templates/shiny-configmap.yaml +# This configmap relates to the shiny app pod spawned by the shinyproxy deployment +apiVersion: v1 +kind: ConfigMap +metadata: +name: r9d95bb4a-shiny-configmap +namespace: default +data: +shiny-server.conf: |- + # Instruct Shiny Server to run applications as the user "shiny" + run_as shiny; + http_keepalive_timeout 600; + # Define a server that listens on user defined port + server { + listen 3839 0.0.0.0; + # Define a location at the base URL + location / { + # Host the directory of Shiny Apps stored in this directory + site_dir /srv/shiny-server/; + # Log all Shiny output to files in this directory + log_dir /var/log/shiny-server; + directory_index on; + app_init_timeout 600; + app_idle_timeout 600; + } + app_init_timeout 600; + app_idle_timeout 600; + } +--- +# Source: shinyproxy/templates/service.yaml +apiVersion: v1 +kind: Service +metadata: +name: r9d95bb4a-shinyproxyapp +namespace: default +labels: + run: r9d95bb4a-shinyapp +spec: +ports: +- protocol: TCP + port: 80 + targetPort: 8080 +selector: + release: r9d95bb4a +--- +# Source: shinyproxy/templates/deployment.yaml +apiVersion: apps/v1 +kind: Deployment +metadata: +name: r9d95bb4a +namespace: default +annotations: + reloader.stakater.com/auto: "true" +spec: +replicas: 1 +selector: + matchLabels: + release: r9d95bb4a + app: shinyproxy-deployment + project: dp-241112-ono + type: app + pod: serve +template: + metadata: + annotations: + prometheus.io/scrape: "true" + prometheus.io/path: /metrics + # prometheus.io/port: "8501" + labels: + release: r9d95bb4a + access: project + app: shinyproxy-deployment + project: dp-241112-ono + site-dir: srv-shiny-server + networking/allow-internet-egress: "true" + networking/allow-egress-to-studio-web: "true" + allow-api-access: "true" + type: app + pod: serve + spec: + securityContext: + fsGroup: 1000 + seccompProfile: + type: RuntimeDefault + serviceAccountName: default-shinyproxy + containers: + - name: serve + image: ghcr.io/scilifelabdatacentre/serve-shinyproxy:v1 + # BAD entries here: + ports: + - containerPort: 8080 + + non-existing-label: BAD + volumeMounts: + - name: application-conf-r9d95bb4a + mountPath: /opt/shinyproxy/config + imagePullPolicy: IfNotPresent + securityContext: + allowPrivilegeEscalation: false + capabilities: + drop: + - all + privileged: false + runAsGroup: 1000 + runAsNonRoot: true + runAsUser: 1000 + resources: + limits: + cpu: 300m + memory: 800Mi + requests: + cpu: 200m + memory: 512Mi + readinessProbe: + tcpSocket: + port: 8080 + initialDelaySeconds: 60 + periodSeconds: 15 + volumes: + - name: application-conf-r9d95bb4a + configMap: + name: r9d95bb4a-shinyproxy-configmap + dnsPolicy: ClusterFirst +--- +# Source: shinyproxy/templates/ingress.yaml +apiVersion: networking.k8s.io/v1 +kind: Ingress +metadata: +name: r9d95bb4a-ingress +namespace: default +labels: + io.kompose.service: r9d95bb4a-ingress +annotations: + nginx.ingress.kubernetes.io/proxy-body-size: 2000m +spec: +rules: + - host: r9d95bb4a.studio.127.0.0.1.nip.io + http: + paths: + - path: / + backend: + service: + name: r9d95bb4a-shinyproxyapp + port: + number: 80 + pathType: ImplementationSpecific +tls: + - secretName: prod-ingress + hosts: + - studio.127.0.0.1.nip.io + """ + + def setUp(self) -> None: + # Execute any Celery tasks synchronously + app.conf.update(CELERY_ALWAYS_EAGER=True) + + self.kdm = KubernetesDeploymentManifest(override_deployment_id=self.DEPLOYMENT_ID) + + """ + Test method validate_manifest. + It runs everything in memory without creating files (except for the values file). + """ + + def test_validate_manifest(self): + # Validate the manifest documents + is_valid, output, _ = self.kdm.validate_manifest(self.DEPLOYMENT_DATA) + + if is_valid: + print(output) + + self.assertFalse(is_valid) + + """ + Test method validate_kubernetes_pod_patches_yaml with invalid input + """ + + def test_validate_kubernetes_pod_patches_yaml(self): + kpp_text = r""" + - op: add + path: /spec/securityContext + value: + runAsUser: 999 + runAsGroup: 999 + runAsNonRoot: true + allowPrivilegeEscalation: false + privileged: false + - op: add + path BAD-HERE /spec/volumes + value: + - name: tmp-release-name-shiny-configmap + configMap: + name: tmp-release-name-shiny-configmap + items: + - key: shiny-server.conf + path: shiny-server.conf + - op: add + path: /spec/containers/0/volumeMounts + value: + - mountPath: /etc/shiny-server/shiny-server.conf + subPath: shiny-server.conf + name: tmp-release-name-shiny-configmap +""" + + is_valid, output, _ = self.kdm.validate_kubernetes_pod_patches_yaml(kpp_text) + + self.assertFalse(is_valid, f"The input should be invalid. {output}") + self.assertIsNotNone(output) diff --git a/apps/types_/kubernetes_deployment_manifest.py b/apps/types_/kubernetes_deployment_manifest.py new file mode 100644 index 000000000..6acfa5805 --- /dev/null +++ b/apps/types_/kubernetes_deployment_manifest.py @@ -0,0 +1,234 @@ +import subprocess +import uuid +from datetime import datetime +from pathlib import Path +from typing import NamedTuple + +import kubernetes_validate +import yaml +import yaml.scanner +from django.conf import settings + +from studio.utils import get_logger + +logger = get_logger(__name__) + + +class K8SDeploymentFiles(NamedTuple): + values_file: Path + deployment_file: Path + + +class K8SManifestValidationResult(NamedTuple): + is_valid: bool + message: str + validation_error: str | None = None + + +class KubernetesDeploymentManifest: + """Represents a k8s deployment manifest""" + + # Use the configured k8s cluster version, e.g. "1.28" + CLUSTER_VERSION = settings.CLUSTER_VERSION if hasattr(settings, "CLUSTER_VERSION") else None + + _charts_dir = Path(settings.BASE_DIR, "charts", "values") + _deployment_id = None + _manifest_content = None + + def __init__(self, override_deployment_id: str | None = None): + if override_deployment_id: + self._deployment_id = override_deployment_id + else: + # Generate and set a unique deployment id + # Example pattern: "20241126_085112_02500f53-7435-49a2-a5c2-66443e677a33" + now = datetime.now().strftime("%Y%m%d_%H%M%S") + self._deployment_id = f"{now}_{str(uuid.uuid4())}" + + def get_filepaths(self) -> K8SDeploymentFiles: + """Returns two filepaths for this deployment for the values file and deployment file.""" + deployment_fileid = self.get_deployment_id() + values_file = f"{self._charts_dir}/{deployment_fileid}.yaml" + deployment_file = f"{self._charts_dir}/{deployment_fileid}_deployment.yaml" + return K8SDeploymentFiles(values_file, deployment_file) + + def get_deployment_id(self) -> str: + """Gets the unique deployment id""" + return self._deployment_id + + def save_as_values_file(self, values_data: str) -> None: + """Saves values data to a yaml file.""" + values_file, _ = self.get_filepaths() + with open(values_file, "w") as f: + f.write(values_data) + + def generate_manifest_yaml_from_template( + self, chart: str, values_file: str, namespace: str, version: str = None, save_to_file: bool = False + ) -> tuple[str | None, str | None]: + """ + Generate the manifest yaml for this deployment. + The Helm command should be run as a Celery task but Celery lacks support for class methods. + Therefore we import the Helm command function from the tasks module. + When run in unit tests, this needs to use syncronously using CELERY_ALWAYS_EAGER + """ + + from ..tasks import helm_template + + output, error = helm_template(chart, values_file, namespace, version) + + if not error: + if save_to_file: + _, deployment_file = self.get_filepaths() + with open(deployment_file, "w") as f: + f.write(output) + + return output, error + + def _delete_deployment_file(self) -> None: + """Removes the deployment file if it exist.""" + files = self.kdm.get_filepaths() + + deployment_file = files["deployment_file"] + + if Path(deployment_file).is_file(): + subprocess.run(["rm", "-f", deployment_file]) + + def validate_manifest(self, manifest_data: str) -> K8SManifestValidationResult: + """ + Validates manifest documents for this deployment. + Uses kubernetes-validate to validate in-memory. + + Returns: + K8SManifestValidationResult: is_valid, output + """ + invalid_docs = [] + + # Parse the yaml manifest into multiple documents + try: + documents = list(yaml.safe_load_all(manifest_data)) + except yaml.scanner.ScannerError as e: + return K8SManifestValidationResult(False, f"Unable to parse manifest yaml. ScannerError. {e}") + except Exception as e: + return K8SManifestValidationResult(False, f"Unable to parse manifest yaml. {e}") + + # Now validate each manifest document + for doc in documents: + try: + logger.debug(f"Validating document {doc['kind']}") + + if self.CLUSTER_VERSION: + kubernetes_validate.validate(doc, self.CLUSTER_VERSION, strict=True) + else: + logger.info("Validating the k8s manifest without a set k8s version.") + kubernetes_validate.validate(doc) + + except kubernetes_validate.ValidationError as e: + invalid_docs.append(doc["kind"]) + logger.warning(f"The kubernetes-validate tool found errors: {e}") + + except Exception as e: + invalid_docs.append(doc["kind"]) + logger.warning(f"An error occurred during validation: {e}") + + output = f"Nr of docs with errors {len(invalid_docs)} of {len(documents)}" + logger.info(output) + + is_valid = len(invalid_docs) == 0 + + return K8SManifestValidationResult(is_valid, output) + + def extract_kubernetes_pod_patches_from_manifest(self, manifest_data: str) -> str | None: + """ + Extracts a section of the manifest yaml known as kubernetes-pod-patches. + + Returns: + str: The subset text or None if not found in the manifest data. + Throws: + yaml.scanner.ScannerError if unable to parse yaml + """ + start_index = manifest_data.find("kubernetes-pod-patches") + + if start_index == -1: + return None + + # Extract the kubernetes-pod-patches data from the YAML data + # Parse the yaml manifest into multiple documents + documents = list(yaml.safe_load_all(manifest_data)) + + # Search for the kubernetes-pod-patches section + for doc in documents: + if doc["kind"] == "ConfigMap": + application_yml_data = doc.get("data", {}).get("application.yml") + + if application_yml_data: + application_config = yaml.safe_load(application_yml_data) + proxy_data = application_config.get("proxy") + + if proxy_data: + specs_data = proxy_data.get("specs") + + if specs_data: + kubernetes_pod_patches_data = None + for spec in specs_data: + kubernetes_pod_patches_data = spec.get("kubernetes-pod-patches") + if kubernetes_pod_patches_data: + return kubernetes_pod_patches_data.strip() + + return None + + def validate_kubernetes_pod_patches_yaml(self, input: str) -> K8SManifestValidationResult: + """ + Validates the kubernetes-pod-patches section. + + Returns: + K8SManifestValidationResult: is_valid, message + """ + + try: + kubernetes_pod_patches = yaml.safe_load(input) + + if not isinstance(kubernetes_pod_patches, list): + return K8SManifestValidationResult(False, "kubernetes-pod-patches should be a list") + + except yaml.YAMLError as e: + return K8SManifestValidationResult(False, f"kubernetes-pod-patches is invalid YAML: {e}") + except ValueError as e: + return K8SManifestValidationResult(False, f"kubernetes-pod-patches is invalid: {e}") + + return K8SManifestValidationResult(True, None) + + def _validate_manifest_file(self) -> dict[bool, str, str]: + """ + Validates the manifest file for this deployment. + Note: This does not appear to be working, but kept for continued testing. + + Returns: + dict[bool,str,str]: is_valid, output, validation_error + """ + from ..tasks import kubectl_apply_dry + + _, deployment_file = self.get_filepaths() + output, error = kubectl_apply_dry(deployment_file, target_strategy="client") + + if error: + return False, output, error + + if output is not None and "error:" in output: + return False, output, error + + return True, output, error + + def check_helm_version(self) -> tuple[str | None, str | None]: + """ + Verifies that the Helm CLI is installed and accessible. + + Returns: + tuple[str | None, str | None]: stdout, stderr + """ + + command = "helm version" + # Execute the command + try: + result = subprocess.run(command.split(" "), check=True, text=True, capture_output=True) + return result.stdout, None + except subprocess.CalledProcessError as e: + return e.stdout, e.stderr diff --git a/apps/views.py b/apps/views.py index e241ce0cb..2c0324922 100644 --- a/apps/views.py +++ b/apps/views.py @@ -5,8 +5,9 @@ from django.contrib.auth import get_user_model from django.core.exceptions import PermissionDenied from django.db import transaction -from django.http import HttpResponseForbidden, JsonResponse +from django.http import HttpResponse, HttpResponseForbidden, JsonResponse from django.shortcuts import HttpResponseRedirect, render, reverse +from django.utils import timezone from django.utils.decorators import method_decorator from django.views import View from guardian.decorators import permission_required_or_403 @@ -193,7 +194,8 @@ def delete(request, project, app_slug, app_id): serialized_instance = instance.serialize() delete_resource.delay(serialized_instance) - # fix: in case appinstance is public swich to private + instance.deleted_on = timezone.now() + # fix: in case appinstance is public switch to private instance.access = "private" instance.save() @@ -221,6 +223,9 @@ def get(self, request, project, app_slug, app_id=None): project_slug = project project = Project.objects.get(slug=project_slug) + if request.user.is_superuser and project.status == "deleted": + return HttpResponse("This project has been deleted by the user.") + form = self.get_form(request, project, app_slug, app_id) if form is None or not getattr(form, "is_valid", False): diff --git a/common/models.py b/common/models.py index e1019d878..9df2e296f 100644 --- a/common/models.py +++ b/common/models.py @@ -7,6 +7,12 @@ logger = get_logger(__name__) +class UserProfileManager(models.Manager): + def create_user_profile(self, user: User): + user_profile = self.create(user=user) + return user_profile + + class UserProfile(models.Model): user = models.OneToOneField(User, on_delete=models.CASCADE) affiliation = models.CharField(max_length=100, blank=True) @@ -19,6 +25,8 @@ class UserProfile(models.Model): note = models.TextField(max_length=1000, blank=True) + objects = UserProfileManager() + def __str__(self): return f"{self.user.email}" diff --git a/cypress/e2e/setup-scripts/seed_login_user.py b/cypress/e2e/setup-scripts/seed_login_user.py index cbfe132e5..4e73a632e 100755 --- a/cypress/e2e/setup-scripts/seed_login_user.py +++ b/cypress/e2e/setup-scripts/seed_login_user.py @@ -6,6 +6,7 @@ from django.conf import settings from django.contrib.auth.models import User +from common.models import UserProfile from projects.models import Project cypress_path = os.path.join(settings.BASE_DIR, "cypress/fixtures") @@ -22,4 +23,12 @@ # Create the login user user = User.objects.create_user(username, email, pwd) + user.first_name = userdata["first_name"] + user.last_name = userdata["last_name"] user.save() + + # needed for editing profile information (see SS-1177) + user_profile = UserProfile.objects.create_user_profile(user) + user_profile.department = userdata["department"] + user_profile.affiliation = userdata["affiliation"] + user_profile.save() diff --git a/cypress/e2e/ui-tests/test-deploy-app.cy.js b/cypress/e2e/ui-tests/test-deploy-app.cy.js index e8ed49682..4cffdff7f 100644 --- a/cypress/e2e/ui-tests/test-deploy-app.cy.js +++ b/cypress/e2e/ui-tests/test-deploy-app.cy.js @@ -65,11 +65,11 @@ describe("Test deploying app", () => { it("can deploy a project and public app using the custom app chart", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { // Names of objects to create const project_name = "e2e-deploy-app-test" - const app_name_project = "e2e-streamlit-example-project" - const app_name_public = "e2e-streamlit-example-public" - const app_name_public_2 = "e2e-streamlit-example-2-public" - const app_description = "e2e-streamlit-description" - const app_description_2 = "e2e-streamlit-2-description" + const app_name_project = "e2e-custom-example-project" + const app_name_public = "e2e-custom-example-public" + const app_name_public_2 = "e2e-custom-example-2-public" + const app_description = "e2e-custom-description" + const app_description_2 = "e2e-custom-2-description" const image_name = "ghcr.io/scilifelabdatacentre/example-streamlit:latest" const image_name_2 = "ghcr.io/scilifelabdatacentre/example-streamlit:230921-1443" const image_port = "8501" @@ -80,6 +80,9 @@ describe("Test deploying app", () => { const createResources = Cypress.env('create_resources'); const app_type = "Custom App" const app_source_code_public = "https://doi.org/example" + const default_url_subpath = "default/url/subpath/" + const changed_default_url_subpath = "changed/subpath/" + const invalid_default_url_subpath = "€% / ()" let volume_display_text = "project-vol (" + project_name + ")" @@ -97,9 +100,15 @@ describe("Test deploying app", () => { cy.get('#id_port').clear().type(image_port) cy.get('#id_image').clear().type(image_name) cy.get('#id_path').clear().type(app_path) + cy.get('button.accordion-button.collapsed[data-bs-target="#advanced-settings"]').click(); // Go to Advanced settings + cy.get('#id_default_url_subpath').clear().type(default_url_subpath) // provide default_url_subpath cy.get('#submit-id-submit').contains('Submit').click() // check that the app was created verifyAppStatus(app_name_project, "Running", "project") + // check that the default URL subpath was created + cy.contains('a', app_name_project) + .should('have.attr', 'href') + .and('include', default_url_subpath); // check that the app is not visible under public apps cy.visit('/apps/') cy.get('h3').should('contain', 'Public applications and models') @@ -138,6 +147,8 @@ describe("Test deploying app", () => { cy.get('#id_image').clear().type(image_name) cy.get('#id_path').clear().type(app_path) cy.get('#id_volume').select(volume_display_text) + cy.get('button.accordion-button.collapsed[data-bs-target="#advanced-settings"]').click(); // Go to Advanced settings + cy.get('#id_default_url_subpath').clear().type(default_url_subpath) // provide default_url_subpath cy.get('#submit-id-submit').contains('Submit').click() verifyAppStatus(app_name_public, "Running", "public") @@ -147,6 +158,11 @@ describe("Test deploying app", () => { verifyAppStatus(app_name_public, "Running", "public") }) + // check that the default URL subpath was created + cy.contains('a', app_name_public) + .should('have.attr', 'href') + .and('include', default_url_subpath); + cy.visit("/apps") cy.get('h5.card-title').should('contain', app_name_public) cy.get('.card-text').find('p').should('contain', app_description) @@ -199,6 +215,9 @@ describe("Test deploying app", () => { cy.get('#id_image').clear().type(image_name_2) cy.get('#id_path').should('have.value', app_path) cy.get('#id_path').clear().type(app_path_2) + cy.get('button.accordion-button.collapsed[data-bs-target="#advanced-settings"]').click(); // Go to Advanced settings + cy.get('#id_default_url_subpath').should('have.value', default_url_subpath) // default_url_subpath should be same as before + cy.get('#id_default_url_subpath').clear().type(changed_default_url_subpath) // provide changed_default_url_subpath cy.get('#submit-id-submit').contains('Submit').click() // NB: it will get status "Running" but it won't work because the new port is incorrect @@ -209,6 +228,11 @@ describe("Test deploying app", () => { verifyAppStatus(app_name_public_2, "Running", "link") }) + // check that the default URL subpath was changed + cy.contains('a', app_name_public_2) + .should('have.attr', 'href') + .and('include', changed_default_url_subpath); + // Check that the changes were saved cy.visit("/projects/") cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() @@ -221,6 +245,17 @@ describe("Test deploying app", () => { cy.get('#id_port').should('have.value', image_port_2) cy.get('#id_image').should('have.value', image_name_2) cy.get('#id_path').should('have.value', app_path_2) + cy.get('button.accordion-button.collapsed[data-bs-target="#advanced-settings"]').click(); // Go to Advanced settings + cy.get('#id_default_url_subpath').should('have.value', changed_default_url_subpath) // changed_url_subpath should be same as before + + // Make sure that giving invalid input in default_url_subpath field results in an error + cy.get('#id_default_url_subpath').clear().type(invalid_default_url_subpath) // provide invalid_default_url_subpath + cy.get('#submit-id-submit').contains('Submit').click() // this should trigger the error + + // check this invalid_default_url_subpath error was matched + cy.get('.client-validation-feedback.client-validation-invalid') + .should('exist') + .and('include.text', 'Your custom URL subpath is not valid, please correct it'); // Remove the created public app and verify that it is deleted from public apps page cy.logf("Now deleting the public app", Cypress.currentTest) @@ -243,6 +278,7 @@ describe("Test deploying app", () => { }) // This test is skipped because it will only work against a Serve instance running on our cluster. should be switched on for the e2e tests against remote. + // We need to add a test here for validating Site-dir option. See SS-1206 for details it.skip("can deploy a shiny app", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { // Names of objects to create const project_name = "e2e-deploy-app-test" @@ -435,6 +471,132 @@ describe("Test deploying app", () => { } }) + it("can deploy a gradio app", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { + // Simple test to create and delete a Gradio app + // Names of objects to create + const project_name = "e2e-deploy-app-test" + const app_name = "e2e-gradio-example" + const app_description = "e2e-gradio-description" + const source_code_url = "https://doi.org/example" + const image_name = "ghcr.io/scilifelabdatacentre/gradio-flower-classification:20241118-174426" + const image_port = "7860" + const createResources = Cypress.env('create_resources'); + const app_type = "Gradio App" + + if (createResources === true) { + // Create Gradio app + cy.logf("Creating a gradio app", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('div.card-body:contains("' + app_type + '")').find('a:contains("Create")').click() + cy.get('#id_name').type(app_name) + cy.get('#id_description').type(app_description) + cy.get('#id_access').select('Public') + cy.get('#id_source_code_url').type(source_code_url) + cy.get('#id_image').clear().type(image_name) + cy.get('#id_port').clear().type(image_port) + cy.get('#submit-id-submit').contains('Submit').click() + // Back on project page + cy.url().should("not.include", "/apps/settings") + cy.get('h3').should('have.text', project_name); + // check that the app was created + verifyAppStatus(app_name, "Running", "public") + + // Verify Gradio app values + cy.logf("Checking that all dash app settings were saved", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('tr:contains("' + app_name + '")').find('i.bi-three-dots-vertical').click() + cy.get('tr:contains("' + app_name + '")').find('a').contains('Settings').click() + cy.get('#id_name').should('have.value', app_name) + cy.get('#id_description').should('have.value', app_description) + cy.get('#id_access').find(':selected').should('contain', 'Public') + cy.get('#id_image').should('have.value', image_name) + cy.get('#id_port').should('have.value', image_port) + + // Delete the Gradio app + cy.logf("Deleting the gradio app", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('tr:contains("' + app_name + '")').find('i.bi-three-dots-vertical').click() + cy.get('tr:contains("' + app_name + '")').find('a.confirm-delete').click() + cy.get('button').contains('Delete').click() + verifyAppStatus(app_name, "Deleted", "") + + // check that the app is not visible under public apps + cy.visit('/apps/') + cy.get("title").should("have.text", "Apps and models | SciLifeLab Serve (beta)") + cy.get('h3').should('contain', 'Public applications and models') + cy.contains('h5.card-title', app_name).should('not.exist') + + } else { + cy.logf('Skipped because create_resources is not true', Cypress.currentTest); + } + }) + + it("can deploy a streamlit app", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { + // Simple test to create and delete a Streamlit app + // Names of objects to create + const project_name = "e2e-deploy-app-test" + const app_name = "e2e-streamlit-example" + const app_description = "e2e-streamlit-description" + const source_code_url = "https://doi.org/example" + const image_name = "ghcr.io/scilifelabdatacentre/streamlit-image-to-smiles:20241112-183549" + const image_port = "8501" + const createResources = Cypress.env('create_resources'); + const app_type = "Streamlit App" + + if (createResources === true) { + // Create Streamlit app + cy.logf("Creating a streamlit app", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('div.card-body:contains("' + app_type + '")').find('a:contains("Create")').click() + cy.get('#id_name').type(app_name) + cy.get('#id_description').type(app_description) + cy.get('#id_access').select('Public') + cy.get('#id_source_code_url').type(source_code_url) + cy.get('#id_image').clear().type(image_name) + cy.get('#id_port').clear().type(image_port) + cy.get('#submit-id-submit').contains('Submit').click() + // Back on project page + cy.url().should("not.include", "/apps/settings") + cy.get('h3').should('have.text', project_name); + // check that the app was created + verifyAppStatus(app_name, "Running", "public") + + // Verify Streamlit app values + cy.logf("Checking that all dash app settings were saved", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('tr:contains("' + app_name + '")').find('i.bi-three-dots-vertical').click() + cy.get('tr:contains("' + app_name + '")').find('a').contains('Settings').click() + cy.get('#id_name').should('have.value', app_name) + cy.get('#id_description').should('have.value', app_description) + cy.get('#id_access').find(':selected').should('contain', 'Public') + cy.get('#id_image').should('have.value', image_name) + cy.get('#id_port').should('have.value', image_port) + + // Delete the Streamlit app + cy.logf("Deleting the dash app", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('tr:contains("' + app_name + '")').find('i.bi-three-dots-vertical').click() + cy.get('tr:contains("' + app_name + '")').find('a.confirm-delete').click() + cy.get('button').contains('Delete').click() + verifyAppStatus(app_name, "Deleted", "") + + // check that the app is not visible under public apps + cy.visit('/apps/') + cy.get("title").should("have.text", "Apps and models | SciLifeLab Serve (beta)") + cy.get('h3').should('contain', 'Public applications and models') + cy.contains('h5.card-title', app_name).should('not.exist') + + } else { + cy.logf('Skipped because create_resources is not true', Cypress.currentTest); + } + }) + it("can modify app settings resulting in NO k8s redeployment shows correct app status", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { // An advanced test to verify user can modify app settings such as the name and description // Names of objects to create diff --git a/cypress/e2e/ui-tests/test-login-account-handling.cy.js b/cypress/e2e/ui-tests/test-login-account-handling.cy.js index 1312da8e3..e2259a4a8 100644 --- a/cypress/e2e/ui-tests/test-login-account-handling.cy.js +++ b/cypress/e2e/ui-tests/test-login-account-handling.cy.js @@ -60,6 +60,39 @@ describe("Test login, profile page view, password change, password reset", () => cy.get('div.col-8').should("contain", users.login_user.email) }) + it("can edit user profile information", () => { + + function editProfile(firstName, lastName, department) { + + cy.url().should("include", "edit-profile/") + + cy.get('#id_first_name').clear().type(firstName); + cy.get('#id_last_name').clear().type(lastName); + cy.get('#id_department').clear().type(department); + cy.get('#submit-id-save').click(); + + cy.contains(firstName).should('exist'); + cy.contains(lastName).should('exist'); + cy.contains(department).should('exist'); + } + + + cy.loginViaUI(users.login_user.email, users.login_user.password) + + cy.log("Editing and verifying userprofile by accessing it from the navbar") + cy.visit("/") + cy.get('button.btn-profile').click() + cy.get('li.btn-group').find('a').contains("Edit profile").click() + editProfile('changing first name', 'changing last name', 'changing department name'); + + cy.log("Editing and verifying userprofile by accessing it from the profile view") + cy.visit("/") + cy.get('button.btn-profile').click() + cy.get('li.btn-group').find('a').contains("My profile").click() + cy.get('button.btn-profile').contains('a', 'Edit').click(); + editProfile('changing first name again', 'changing last name again', 'changing department name again'); + }) + it("can change user password", () => { cy.loginViaUI(users.login_user.email, users.login_user.password) cy.visit("/") diff --git a/cypress/e2e/ui-tests/test-project-as-contributor.cy.js b/cypress/e2e/ui-tests/test-project-as-contributor.cy.js index 34f2387ad..efebcb471 100644 --- a/cypress/e2e/ui-tests/test-project-as-contributor.cy.js +++ b/cypress/e2e/ui-tests/test-project-as-contributor.cy.js @@ -102,6 +102,24 @@ describe("Test project contributor user functionality", () => { cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() cy.get('.card-text').should('contain', project_description_2) + cy.logf("Check that creating another project with same existing project name will create an error", Cypress.currentTest) + cy.visit("/projects/") + cy.get("a").contains('New project').click() + cy.get("a").contains('Create').first().click() + cy.get('input[name=name]').type(project_name) // same name used before + cy.get('textarea[name=description]').type(project_description) + cy.get("input[name=save]").contains('Create project').click() // should generate an error + // Check that the error message is displayed + cy.get('#flash-msg') + .should('be.visible') + .and('have.class', 'alert-danger') + .and('contain.text', `Project cannot be created because a project with name '${project_name}' already exists.`); + cy.logf("Error is successfully generated when trying to create a new project with the same existing project name", Cypress.currentTest) + + // go back to the previously created project + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a.btn').contains('Open').click() + cy.logf("Delete the project from the settings menu", Cypress.currentTest) cy.get('[data-cy="settings"]').click() cy.get('a').contains("Delete").click() @@ -117,85 +135,6 @@ describe("Test project contributor user functionality", () => { }) }) - // This test cannot run properly in GitHub workflows because there is an issue with minio creation there. Therefore, it should be run locally to make sure things work. For GitHub, skipping it. - - // TODO: When models are launched, make sure that this test is activated - it.skip("can create a new project with ML serving template, open settings, delete from settings", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { - - // Names of objects to create - const project_name = "e2e-create-ml-proj-test" - const project_title_name = project_name + " | SciLifeLab Serve (beta)" - - cy.visit("/projects/") - cy.get("title").should("have.text", "My projects | SciLifeLab Serve (beta)") - - // Click button for UI to create a new project - cy.get("a").contains('New project').click() - cy.url().should("include", "projects/templates") - cy.get('h3').should('contain', 'New project') - - // Next click button to create a new blank project - cy.get(".card-footer").last().contains("Create").click() - cy.url().should("include", "projects/create/?template=") - cy.get('h3').should('contain', 'New project') - - // Fill in the options for creating a new blank project - cy.get('input[name=name]').type(project_name) - cy.get('textarea[name=description]').type("A test project created by an e2e test.") - cy.get("input[name=save]").contains('Create project').click() - cy.wait(5000) // sometimes it takes a while to create a project - .then((href) => { - cy.logf(href, Cypress.currentTest) - cy.reload() - cy.get("title").should("have.text", project_title_name) - cy.get('h3').should('contain', project_name) - - // Check that the correct deployment options are available - cy.get('.card-header').find('h5').should('contain', 'Develop') - cy.get('.card-header').find('h5').should('contain', 'Serve') - cy.get('.card-header').find('h5').should('contain', 'Models') - cy.get('.card-header').find('h5').should('not.contain', 'Additional options [admins only]') - - // Section Models - Machine Learning Models - // Navigate to the create models view and cancel back again - cy.get("div#models").first("h5").should("contain", "Machine Learning Models") - cy.get("div#models").find("a.btn").click() - .then((href) => { - cy.url().should("include", "models/create") - cy.get('h3').should("contain", "Create Model Object") - cy.get("button").contains("Cancel").click() - .then((href) => { - cy.get('h3').should("contain", project_name) - }) - }) - - // Check that project settings are available - cy.get('[data-cy="settings"]').click() - cy.url().should("include", "settings") - cy.get('h3').should('contain', 'Project settings') - - // Check that the correct project settings are visible (i.e. no extra settings) - cy.get('.list-group').find('a').should('contain', 'Access') - cy.get('.list-group').find('a').should('not.contain', 'S3 storage') - cy.get('.list-group').find('a').should('not.contain', 'MLFlow') - cy.get('.list-group').find('a').should('not.contain', 'Flavors') - cy.get('.list-group').find('a').should('not.contain', 'Environments') - - // Delete the project from the settings menu - cy.get('a').contains("Delete").click() - .then((href) => { - cy.get('div#delete').should('have.css', 'display', 'block') - cy.get('#id_delete_button').parent().parent().find('button').contains('Delete').click() - .then((href) => { - cy.get('div#deleteModal').should('have.css', 'display', 'block') - cy.get('div#deleteModal').find('button').contains('Confirm').click() - }) - cy.contains(project_name).should('not.exist') - - }) - }) - }) - it("can delete a project from projects overview", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { // Names of objects to create @@ -226,7 +165,7 @@ describe("Test project contributor user functionality", () => { it("limit on number of apps per project is enforced", () => { // Names of objects to create - const project_name = "e2e-create-proj-test" + const project_name = "e2e-create-proj-test-1" // Create a project cy.visit("/projects/") @@ -268,14 +207,14 @@ describe("Test project contributor user functionality", () => { it("limit on number of projects per user is enforced", () => { // Names of projects to create - const project_name = "e2e-create-proj-test" + const project_name = "e2e-create-proj-test-2" // Create 10 projects (current limit) - Cypress._.times(10, () => { + Cypress._.times(10, (i) => { cy.visit("/projects/") cy.get("a").contains('New project').click() cy.get("a").contains('Create').first().click() - cy.get('input[name=name]').type(project_name) + cy.get('input[name=name]').type(`${project_name}-${i + 1}`); cy.get("input[name=save]").contains('Create project').click() }); cy.wait(5000) // sometimes it takes a while to create a project but just waiting once at the end should be enough @@ -467,7 +406,7 @@ describe("Test project contributor user functionality", () => { }) it("can create a file management instance", { defaultCommandTimeout: defaultCmdTimeoutMs }, () => { - const project_name = "e2e-create-proj-test" + const project_name = "e2e-create-proj-test-3" cy.logf("Creating a blank project", Cypress.currentTest) cy.createBlankProject(project_name) diff --git a/cypress/e2e/ui-tests/test-superuser-functionality.cy.js b/cypress/e2e/ui-tests/test-superuser-functionality.cy.js index a30a61705..7665924d4 100644 --- a/cypress/e2e/ui-tests/test-superuser-functionality.cy.js +++ b/cypress/e2e/ui-tests/test-superuser-functionality.cy.js @@ -45,6 +45,7 @@ describe("Test superuser access", () => { // Names of objects to create const project_name = "e2e-create-default-proj-test" const project_description = "A test project created by an e2e test." + const project_description_duplicate = "A test project with an existing project name" const project_description_2 = "An alternative project description created by an e2e test." cy.visit("/projects/") @@ -65,12 +66,10 @@ describe("Test superuser access", () => { cy.get('input[name=name]').type(project_name) cy.get('textarea[name=description]').type(project_description) cy.get("input[name=save]").contains('Create project').click() - //cy.wait(5000) // sometimes it takes a while to create a project. Not needed because of cypress retryability. cy.get('h3', {timeout: longCmdTimeoutMs}).should('contain', project_name) cy.get('.card-text').should('contain', project_description) - cy.logf("Checking that project settings are available", Cypress.currentTest) cy.get('[data-cy="settings"]').click() cy.url().should("include", "settings") @@ -88,6 +87,32 @@ describe("Test superuser access", () => { cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() cy.get('.card-text').should('contain', project_description_2) + cy.logf("Check that creating another project with same existing project name will work for a superuser", Cypress.currentTest) + cy.visit("/projects/") + cy.get("a").contains('New project').click() + cy.get("a").contains('Create').first().click() + cy.get('input[name=name]').type(project_name) // this name already exists + cy.get('textarea[name=description]').type(project_description_duplicate) // this will be used to ensure to delete it + cy.get("input[name=save]").contains('Create project').click() + cy.get('h3', {timeout: longCmdTimeoutMs}).should('contain', project_name) + cy.get('.card-text').should('contain', project_description_duplicate) // checking that project creation succeeded + // deleting the project with the duplicate name + cy.get('[data-cy="settings"]').click() + cy.get('a').contains("Delete").click() + .then((href) => { + cy.get('div#delete').should('have.css', 'display', 'block') + cy.get('#id_delete_button').parent().parent().find('button').contains('Delete').click() + .then((href) => { + cy.get('div#deleteModal').should('have.css', 'display', 'block') + cy.get('div#deleteModal').find('button').contains('Confirm').click() + }) + // checking that the project with the duplicate name has been deleted + cy.visit("/projects/") + cy.contains(project_description_duplicate).should('not.exist') + }) + // going to the previously created project's page + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a.btn').contains('Open').click() + cy.logf("Deleting the project from the settings menu", Cypress.currentTest) cy.get('[data-cy="settings"]').click() cy.get('a').contains("Delete").click() @@ -139,13 +164,11 @@ describe("Test superuser access", () => { cy.get('#submit-id-submit').contains('Submit').click() cy.get('tr:contains("' + private_app_name_2 + '")').should('exist') // regular user's private app now has a different name - //cy.wait(10000) // Not needed because of the retryability built into cypress. cy.get('tr:contains("' + private_app_name_2 + '")', {timeout: longCmdTimeoutMs}).find('span', {timeout: longCmdTimeoutMs}).should('contain', 'Running') // add this because to make sure the app is running before deleting otherwise it gives an error, cy.logf("Deleting a regular user's private app", Cypress.currentTest) cy.get('tr:contains("' + private_app_name_2 + '")').find('i.bi-three-dots-vertical').click() cy.get('tr:contains("' + private_app_name_2 + '")').find('a.confirm-delete').click() cy.get('button').contains('Delete').click() - //cy.wait(5000) // Not needed because of the retryability built into cypress. cy.get('tr:contains("' + private_app_name_2 + '")', {timeout: longCmdTimeoutMs}).find('span', {timeout: longCmdTimeoutMs}).should('contain', 'Deleted') cy.logf("Deleting a regular user's project", Cypress.currentTest) @@ -163,7 +186,9 @@ describe("Test superuser access", () => { // Names of objects to create const project_name = "e2e-proj-flavor-env-test" const new_flavor_name = "4 CPU, 8 GB RAM" + const new_flavor_name_unused = "Unused flavor" const new_environment_name = "e2e test environment" + const new_environment_name_unused = "Unused environment" cy.logf("Logging in as a regular user and creating a project", Cypress.currentTest) cy.fixture('users.json').then(function (data) { @@ -175,7 +200,6 @@ describe("Test superuser access", () => { cy.get("a").contains('Create').first().click() cy.get('input[name=name]').type(project_name) cy.get("input[name=save]").contains('Create project').click() - //cy.wait(5000) // sometimes it takes a while to create a project. Not needed because of cypress retryability. cy.get('h3').should('contain', project_name) Cypress.session.clearAllSavedSessions() @@ -185,7 +209,7 @@ describe("Test superuser access", () => { cy.loginViaUI(users.superuser.email, users.superuser.password) }) - cy.logf("Creating a new flavor in the regular user's project", Cypress.currentTest) + cy.logf("Creating new flavors in the regular user's project", Cypress.currentTest) cy.visit("/projects/") cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() cy.get('[data-cy="settings"]').click() @@ -197,7 +221,15 @@ describe("Test superuser access", () => { cy.get('input[name="mem_lim"]').clear().type("8Gi") cy.get('button').contains("Create flavor").click() - cy.logf("Creating a new Jupyter Lab environment in the regular user's project", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Flavors').click() + cy.get('input[name="flavor_name"]').type(new_flavor_name_unused) + cy.get('input[name="cpu_req"]').clear().type("500m") + cy.get('input[name="cpu_lim"]').clear().type("4000m") + cy.get('input[name="mem_req"]').clear().type("2Gi") + cy.get('input[name="mem_lim"]').clear().type("8Gi") + cy.get('button').contains("Create flavor").click() + + cy.logf("Creating new Jupyter Lab environments in the regular user's project", Cypress.currentTest) cy.visit("/projects/") cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() cy.get('[data-cy="settings"]').click() @@ -208,12 +240,19 @@ describe("Test superuser access", () => { cy.get('#environment_app').select('Jupyter Lab') cy.get('button').contains("Create environment").click() - Cypress.session.clearAllSavedSessions() - cy.logf("Logging back in as a regular user and using the new flavor and environment", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Environments').click() + cy.get('input[name="environment_name"]').type(new_environment_name_unused) + cy.get('input[name="environment_repository"]').clear().type("docker.io") + cy.get('input[name="environment_image"]').clear().type("jupyter/minimal-notebook:latest") + cy.get('#environment_app').select('Jupyter Lab') + cy.get('button').contains("Create environment").click() + const createResources = Cypress.env('create_resources'); if (createResources === true) { + Cypress.session.clearAllSavedSessions() + cy.logf("Logging back in as a regular user and using the new flavor and environment", Cypress.currentTest) cy.fixture('users.json').then(function (data) { users = data cy.loginViaUI(users.superuser_testuser.email, users.superuser_testuser.password) @@ -286,6 +325,56 @@ describe("Test superuser access", () => { cy.get('tr:contains("' + app_name_env + '")').find('a').contains('Settings').click() cy.get('#id_environment').find(':selected').should('contain', new_environment_name) + cy.logf("Checking that admin cannot delete flavor or environment currently in use", Cypress.currentTest) + cy.logf("Logging in as a superuser", Cypress.currentTest) + // I do this logout and login manually (rather than using Cypress sessions) because Cypress + // refused to do one more session for this user here for some reason + cy.get('button.btn-profile').contains("Profile").click() + cy.get('li.btn-group').find('button').contains("Sign out").click() + cy.get("title").should("have.text", "Logout | SciLifeLab Serve (beta)") + cy.fixture('users.json').then(function (data) { + users = data + cy.visit('/accounts/login/') + cy.get('input[name=username]').type(users.superuser.email) + cy.get('input[name=password]').type(`${users.superuser.password}{enter}`, { log: false }) + cy.url().should('include', '/projects') + cy.get('h3').should('contain', 'My projects') + }) + + cy.logf("Trying to delete a flavor that was used", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('[data-cy="settings"]').click() + cy.logf("Deleting a flavor that was used", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Flavors').click() + cy.get('#flavor_pk').select(new_flavor_name) + cy.get('button').contains("Delete flavor").click() + cy.get('div.alert-danger').contains('Flavor cannot be deleted').should('exist') + + cy.logf("Deleting a flavor that was not used", Cypress.currentTest) + cy.logf("Trying flavor deletion", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Flavors').click() + cy.get('#flavor_pk').select(new_flavor_name_unused) + cy.get('button').contains("Delete flavor").click() + cy.get('.list-group').find('a').contains('Flavors').click() + cy.get('#flavor_pk').contains(new_flavor_name_unused).should("not.exist") + + cy.logf("Trying to delete an environment that was used", Cypress.currentTest) + cy.visit("/projects/") + cy.contains('.card-title', project_name).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() + cy.get('[data-cy="settings"]').click() + cy.logf("Deleting a flavor that was used", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Environments').click() + cy.get('#environment_pk').select(new_environment_name) + cy.get('button').contains("Delete environment").click() + cy.get('div.alert-danger').contains('Environment cannot be deleted').should('exist') + + cy.logf("Deleting an environment that was not used", Cypress.currentTest) + cy.get('.list-group').find('a').contains('Environments').click() + cy.get('#environment_pk').select(new_environment_name_unused) + cy.get('button').contains("Delete environment").click() + cy.get('.list-group').find('a').contains('Environments').click() + cy.get('#environment_pk').contains(new_environment_name_unused).should("not.exist") } else { cy.logf('Skipped because create_resources is not true', Cypress.currentTest); @@ -302,55 +391,11 @@ describe("Test superuser access", () => { }) }) - it.skip("can create a persistent volume", () => { - // This test is not used, since creating PVCs like this is not the correct way any more. - // The correct way is to create a volume in the admin panel. - - // Names of objects to create - const project_name_pvc = "e2e-superuser-pvc-test" - const volume_name = "e2e-project-vol" - - cy.logf("Creating a blank project", Cypress.currentTest) - cy.createBlankProject(project_name_pvc) - - cy.logf("Creating a persistent volume", Cypress.currentTest) - cy.visit("/projects/") - cy.contains('.card-title', project_name_pvc).parents('.card-body').siblings('.card-footer').find('a:contains("Open")').first().click() - - cy.get('div.card-body:contains("Persistent Volume")').find('a:contains("Create")').click() - cy.get('#id_name').type(volume_name) - cy.get('#submit-id-submit').contains('Submit').click() - cy.get('tr:contains("' + volume_name + '")').should('exist') // persistent volume has been created - - // This does not work in our CI. Disabled for now, needs to be enabled for runs against an instance of Serve running on the cluster - /* - cy.get('tr:contains("' + volume_name + '")').find('span').should('contain', 'Installed') // confirm the volume is working - - cy.log("Deleting the created persistent volume") - cy.get('tr:contains("' + volume_name + '")').find('i.bi-three-dots-vertical').click() - cy.get('tr:contains("' + volume_name + '")').find('a.confirm-delete').click() - cy.get('button').contains('Delete').click() - cy.get('tr:contains("' + volume_name + '")').find('span').should('contain', 'Deleted') // confirm the volume has been deleted - */ - - cy.logf("Deleting the created project", Cypress.currentTest) - cy.visit("/projects/") - cy.contains('.card-title', project_name_pvc).parents('.card-body').siblings('.card-footer').find('.confirm-delete').click() - .then((href) => { - cy.get('div#modalConfirmDelete').should('have.css', 'display', 'block') - cy.get("h1#modalConfirmDeleteLabel").then(function($elem) { - cy.get('div#modalConfirmDeleteFooter').find('button').contains('Delete').click() - cy.contains(project_name_pvc).should('not.exist') // confirm the project has been deleted - }) - }) - - }) - it("can bypass N projects limit", () => { // Names of projects to create const project_name = "e2e-superuser-proj-limits-test" - cy.logf("Create 10 projects (current limit for regular users)", Cypress.currentTest) + cy.logf("Create 10 projects (current limit for regular users) with the same name (currently not possible for regular users to use the same name)", Cypress.currentTest) Cypress._.times(10, () => { // better to write this out rather than use the createBlankProject command because then we can do a 5000 ms pause only once cy.visit("/projects/") diff --git a/cypress/fixtures/users.json b/cypress/fixtures/users.json index f6319ecb7..660094cae 100644 --- a/cypress/fixtures/users.json +++ b/cypress/fixtures/users.json @@ -25,7 +25,11 @@ "username": "e2e_tests_deploy_app_user" }, "login_user": { + "affiliation": "uu", + "department": "e2e-tests-login-user-department-name", "email": "no-reply-login@scilifelab.uu.se", + "first_name": "e2e-tests-login-user-first-name", + "last_name": "e2e-tests-login-user-last-name", "password": "tesT12345@", "reset_password": "^x#^PbLnDY!{J0ju", "username": "e2e_tests_login_user" diff --git a/fixtures/apps_fixtures.json b/fixtures/apps_fixtures.json index d9ffa3763..7cfaf3c6c 100644 --- a/fixtures/apps_fixtures.json +++ b/fixtures/apps_fixtures.json @@ -2,7 +2,7 @@ { "fields": { "category": "develop", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/lab:1.0.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/lab:1.0.3", "created_on": "2021-02-19T21:34:37.815Z", "description": "", "logo": "jupyter-lab-logo.svg", @@ -20,7 +20,7 @@ { "fields": { "category": "manage-files", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/filemanager:1.0.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/filemanager:1.0.3", "created_on": "2021-02-19T21:34:37.815Z", "description": "", "logo": "filemanager-logo.svg", @@ -273,7 +273,7 @@ { "fields": { "category": "develop", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/vscode:1.0.1", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/vscode:1.0.2", "created_on": "2021-02-19T21:34:37.815Z", "description": "", "logo": "vscode-logo.svg", @@ -311,7 +311,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.0", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.1", "created_on": "2023-08-25T21:34:37.815Z", "description": "Apps built with Gradio, Streamlit, Flask, etc.", "logo": "default-logo.svg", @@ -329,7 +329,7 @@ { "fields": { "category": "develop", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/rstudio:1.0.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/rstudio:1.0.3", "created_on": "2023-08-31T09:30:00.000Z", "description": "", "logo": "rstudio-logo.svg", @@ -347,7 +347,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/dash-app:1.0.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/dash-app:1.0.3", "created_on": "2023-08-25T21:34:37.815Z", "description": "", "logo": "dashapp-logo.svg", @@ -365,7 +365,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/shinyapp:1.0.3", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/shinyapp:1.0.4", "created_on": "2023-08-25T21:34:37.815Z", "description": "", "logo": "shinyapp-logo.svg", @@ -383,7 +383,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/shinyproxy:1.4.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/shinyproxy:1.4.3", "created_on": "2023-08-25T21:34:37.815Z", "description": "", "logo": "shinyapp-logo.svg", @@ -470,7 +470,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/tissuumaps:1.0.2", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/tissuumaps:1.0.3", "created_on": "2023-08-25T21:34:37.815Z", "description": "App to visualise and explore data using TissUUmaps.", "logo": "tissuumaps-logo.svg", @@ -488,7 +488,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.0", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.1", "created_on": "2023-08-25T21:34:37.815Z", "description": "", "logo": "gradio-logo.svg", @@ -506,7 +506,7 @@ { "fields": { "category": "serve", - "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.0", + "chart": "ghcr.io/scilifelabdatacentre/serve-charts/custom-app:1.1.1", "created_on": "2023-08-25T21:34:37.815Z", "description": "", "logo": "streamlit-logo.svg", diff --git a/poetry.lock b/poetry.lock index 35798b3ae..418af6b38 100644 --- a/poetry.lock +++ b/poetry.lock @@ -21,113 +21,130 @@ wrapt = ">=1.10.10,<2.0.0" awscli = ["awscli (>=1.29.17,<1.29.18)"] boto3 = ["boto3 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for app_model in APP_REGISTRY.iter_orm_models() if issubclass(app_model, SocialMixin)) for app_orm in app_orms: - logger.info("Processing: %s", app_orm) filters = ~Q(app_status__status="Deleted") & Q(access="public") if collection: filters &= Q(collections__slug=collection) @@ -151,24 +150,11 @@ class HomeView(View): template = "portal/home.html" def get(self, request, app_id=0): - all_published_apps_created_on, request = get_public_apps( - request, app_id=app_id, order_by="created_on", order_reverse=True - ) - all_published_apps_updated_on, request = get_public_apps( + published_apps_updated_on, request = get_public_apps( request, app_id=app_id, order_by="updated_on", order_reverse=True - ) - - # Make sure we don't have the same apps displayed in both Recently updated and Recently added fields - published_apps_created_on = [ - app for app in all_published_apps_created_on if app.updated_on <= (app.created_on + timedelta(minutes=60)) - ][ - :3 - ] # we display only 3 apps - published_apps_updated_on = [ - app for app in all_published_apps_updated_on if app.updated_on > (app.created_on + timedelta(minutes=60)) - ][ - :3 - ] # we display only 3 apps + )[ + :6 + ] # we display only 6 apps news_objects = NewsObject.objects.all().order_by("-created_on") link_all_news = False @@ -201,7 +187,6 @@ def get(self, request, app_id=0): context = { "published_apps_updated_on": published_apps_updated_on, - "published_apps_created_on": published_apps_created_on, "news_objects": news_objects, "link_all_news": link_all_news, "collection_objects": collection_objects, diff --git a/projects/tasks.py b/projects/tasks.py index bbb69afee..67f06e105 100644 --- a/projects/tasks.py +++ b/projects/tasks.py @@ -1,6 +1,5 @@ import collections import json -from datetime import datetime from celery import shared_task from django.apps import apps @@ -171,7 +170,7 @@ def delete_project(project_pk): delete_project_apps(project) project.status = "deleted" - project.deleted_on = datetime.now() + project.deleted_on = timezone.now() project.save() diff --git a/projects/tests/test_create_delete_environments.py b/projects/tests/test_create_delete_environments.py new file mode 100644 index 000000000..026ad41b7 --- /dev/null +++ b/projects/tests/test_create_delete_environments.py @@ -0,0 +1,137 @@ +from django.contrib.auth import get_user_model +from django.contrib.messages import get_messages +from django.test import TestCase + +from apps.models import Apps, JupyterInstance, Subdomain +from projects.models import Environment, Project +from projects.views import can_model_instance_be_deleted + +User = get_user_model() + +TEST_USER = {"username": "foo1", "email": "foo@test.com", "password": "bar"} +TEST_SUPERUSER = {"username": "superuser", "email": "superuser@test.com", "password": "bar"} + + +class EnvironmentTestCaseRegularUser(TestCase): + def setUp(self): + user = User.objects.create_user(TEST_USER["username"], TEST_USER["email"], TEST_USER["password"]) + self.project = Project.objects.create_project(name="test-env", owner=user, description="") + User.objects.create_superuser(TEST_SUPERUSER["username"], TEST_SUPERUSER["email"], TEST_SUPERUSER["password"]) + self.app = Apps.objects.create(name="Some App", slug="someapp") + self.env_to_be_deleted = Environment.objects.create( + app=self.app, name="env-to-be-deleted", project=self.project + ) + self.client.login(username=TEST_USER["email"], password=TEST_USER["password"]) + + def test_environment_creation_regular_user(self): + """ + Test regular user not allowed to create environment + """ + n_envs_before = Environment.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/createenvironment/", + { + "environment_name": "new-env-user", + "environment_repository": "n", + "environment_image": "n", + "environment_app": "n", + "app": self.app.pk, + }, + ) + self.assertEqual(response.status_code, 403) + n_envs_after = Environment.objects.count() + self.assertEqual(n_envs_before, n_envs_after) + + def test_environment_deletion_regular_user(self): + """ + Test regular user not allowed to delete environment + """ + n_envs_before = Environment.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteenvironment/", {"environment_pk": self.env_to_be_deleted.pk} + ) + self.assertEqual(response.status_code, 403) + n_envs_after = Environment.objects.count() + self.assertEqual(n_envs_before, n_envs_after) + + +class EnvironmentTestCaseSuperUser(TestCase): + def setUp(self): + self.user = User.objects.create_user(TEST_USER["username"], TEST_USER["email"], TEST_USER["password"]) + self.project = Project.objects.create_project(name="test-env", owner=self.user, description="") + User.objects.create_superuser(TEST_SUPERUSER["username"], TEST_SUPERUSER["email"], TEST_SUPERUSER["password"]) + self.app = Apps.objects.create(name="Some App", slug="someapp") + self.env_to_be_deleted = Environment.objects.create( + app=self.app, name="env-to-be-deleted", project=self.project + ) + self.client.login(username=TEST_SUPERUSER["email"], password=TEST_SUPERUSER["password"]) + + def test_environment_creation_superuser(self): + """ + Test superuser is allowed to create environment + """ + n_envs_before = Environment.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/createenvironment/", + { + "environment_name": "new-env-superuser", + "environment_repository": "n", + "environment_image": "n", + "environment_app": self.app.pk, + }, + follow=True, + ) + self.assertEqual(response.status_code, 200) + n_envs_after = Environment.objects.count() + self.assertEqual(n_envs_before + 1, n_envs_after) + + def test_environment_deletion_inuse_superuser(self): + """ + Test it is not allowed to delete environment that is in use + """ + env_cannot_be_deleted = Environment.objects.create( + app=self.app, name="env-cannot-be-deleted", project=self.project + ) + subdomain = Subdomain.objects.create(subdomain="test_internal") + self.app_instance = JupyterInstance.objects.create( + access="public", + owner=self.user, + name="test_app_instance_env", + app=self.app, + project=self.project, + environment=env_cannot_be_deleted, + subdomain=subdomain, + ) + can_env_be_deleted = can_model_instance_be_deleted("environment", env_cannot_be_deleted) + self.assertFalse(can_env_be_deleted) + + n_envs_before = Environment.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteenvironment/", + {"environment_pk": env_cannot_be_deleted.pk}, + follow=True, + ) + self.assertEqual(response.status_code, 200) + messages = list(get_messages(response.wsgi_request)) + self.assertEqual(len(messages), 1) + self.assertIn("cannot be deleted", str(messages[0])) + n_envs_after = Environment.objects.count() + + self.assertEqual(n_envs_before, n_envs_after) + + def test_environment_deletion_notinuse_superuser(self): + """ + Test it is allowed to delete environment that is not in use + """ + can_env_be_deleted = can_model_instance_be_deleted("environment", self.env_to_be_deleted) + self.assertTrue(can_env_be_deleted) + n_envs_before = Environment.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteenvironment/", + {"environment_pk": self.env_to_be_deleted.pk}, + follow=True, + ) + self.assertEqual(response.status_code, 200) + n_envs_after = Environment.objects.count() + + self.assertEqual(n_envs_before - 1, n_envs_after) diff --git a/projects/tests/test_create_delete_flavors.py b/projects/tests/test_create_delete_flavors.py new file mode 100644 index 000000000..bd81f256d --- /dev/null +++ b/projects/tests/test_create_delete_flavors.py @@ -0,0 +1,134 @@ +from django.contrib.auth import get_user_model +from django.contrib.messages import get_messages +from django.test import TestCase + +from apps.models import Apps, CustomAppInstance, Subdomain +from projects.models import Flavor, Project +from projects.views import can_model_instance_be_deleted + +User = get_user_model() + +TEST_USER = {"username": "foo1", "email": "foo@test.com", "password": "bar"} +TEST_SUPERUSER = {"username": "superuser", "email": "superuser@test.com", "password": "bar"} + + +class FlavorTestCaseRegularUser(TestCase): + def setUp(self): + user = User.objects.create_user(TEST_USER["username"], TEST_USER["email"], TEST_USER["password"]) + self.project = Project.objects.create_project(name="test-flavor", owner=user, description="") + self.flavor_to_be_deleted = Flavor.objects.create(name="flavor-to-be-deleted", project=self.project) + self.client.login(username=TEST_USER["email"], password=TEST_USER["password"]) + + def test_flavor_creation_regular_user(self): + """ + Test regular user not allowed to create flavor + """ + n_flavors_before = Flavor.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/createflavor/", + { + "flavor_name": "new-flavor-user", + "cpu_req": "n", + "mem_req": "n", + "ephmem_req": "n", + "cpu_lim": "n", + "mem_lim": "n", + "ephmem_lim": "n", + }, + ) + self.assertEqual(response.status_code, 403) + n_flavors_after = Flavor.objects.count() + self.assertEqual(n_flavors_before, n_flavors_after) + + def test_flavor_deletion_regular_user(self): + """ + Test regular user not allowed to delete flavor + """ + n_flavors_before = Flavor.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteflavor/", {"flavor_pk": self.flavor_to_be_deleted.pk} + ) + self.assertEqual(response.status_code, 403) + n_flavors_after = Flavor.objects.count() + self.assertEqual(n_flavors_before, n_flavors_after) + + +class FlavorTestCaseSuperUser(TestCase): + def setUp(self): + self.user = User.objects.create_user(TEST_USER["username"], TEST_USER["email"], TEST_USER["password"]) + self.project = Project.objects.create_project(name="test-flavor", owner=self.user, description="") + User.objects.create_superuser(TEST_SUPERUSER["username"], TEST_SUPERUSER["email"], TEST_SUPERUSER["password"]) + self.flavor_to_be_deleted = Flavor.objects.create(name="flavor-to-be-deleted", project=self.project) + self.client.login(username=TEST_SUPERUSER["email"], password=TEST_SUPERUSER["password"]) + + def test_flavor_creation_superuser(self): + """ + Test superuser is allowed to create flavor + """ + n_flavors_before = Flavor.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/createflavor/", + { + "flavor_name": "new-flavor-superuser", + "cpu_req": "n", + "mem_req": "n", + "ephmem_req": "n", + "cpu_lim": "n", + "mem_lim": "n", + "ephmem_lim": "n", + }, + follow=True, + ) + self.assertEqual(response.status_code, 200) + n_flavors_after = Flavor.objects.count() + self.assertEqual(n_flavors_before + 1, n_flavors_after) + + def test_flavor_deletion_inuse_superuser(self): + """ + Test it is not allowed to delete flavor that is in use + """ + flavor_cannot_be_deleted = Flavor.objects.create(name="flavor-cannot-be-deleted", project=self.project) + + app = Apps.objects.create(name="Some App", slug="customapp") + subdomain = Subdomain.objects.create(subdomain="test_internal") + self.app_instance = CustomAppInstance.objects.create( + access="public", + owner=self.user, + name="test_app_instance_flavor", + description="some app description", + app=app, + project=self.project, + flavor=flavor_cannot_be_deleted, + subdomain=subdomain, + ) + + can_flavor_be_deleted = can_model_instance_be_deleted("flavor", flavor_cannot_be_deleted) + self.assertFalse(can_flavor_be_deleted) + + n_flavors_before = Flavor.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteflavor/", {"flavor_pk": flavor_cannot_be_deleted.pk}, follow=True + ) + self.assertEqual(response.status_code, 200) + messages = list(get_messages(response.wsgi_request)) + self.assertEqual(len(messages), 1) + self.assertIn("cannot be deleted", str(messages[0])) + n_flavors_after = Flavor.objects.count() + + self.assertEqual(n_flavors_before, n_flavors_after) + + def test_flavor_deletion_notinuse_superuser(self): + """ + Test it is allowed to delete flavor that is not in use + """ + can_flavor_be_deleted = can_model_instance_be_deleted("flavor", self.flavor_to_be_deleted) + self.assertTrue(can_flavor_be_deleted) + + n_flavors_before = Flavor.objects.count() + response = self.client.post( + f"/projects/{self.project.slug}/deleteflavor/", {"flavor_pk": self.flavor_to_be_deleted.pk}, follow=True + ) + self.assertEqual(response.status_code, 200) + n_flavors_after = Flavor.objects.count() + + self.assertEqual(n_flavors_before - 1, n_flavors_after) diff --git a/projects/tests/test_grant_access_to_project_view.py b/projects/tests/test_grant_access_to_project_view.py index 2b96f5e7d..57fbecdbb 100644 --- a/projects/tests/test_grant_access_to_project_view.py +++ b/projects/tests/test_grant_access_to_project_view.py @@ -9,14 +9,11 @@ test_user_2 = {"username": "foo2", "email": "foo2@test.com", "password": "bar"} -test_client = {"username": "client1", "email": "foo3@test.com", "password": "bar"} - class GrantAccessToProjectViewTestCase(TestCase): def setUp(self) -> None: self.user = User.objects.create_user(test_user_1["username"], test_user_1["email"], test_user_1["password"]) self.user2 = User.objects.create_user(test_user_2["username"], test_user_2["email"], test_user_2["password"]) - self.user3 = User.objects.create_user(test_client["username"], test_client["email"], test_client["password"]) self.client = Client() def get_data(self, user=None): @@ -100,29 +97,3 @@ def test_grant_access_to_non_existing_user(self): authorized = project.authorized.all() self.assertEqual(len(authorized), 0) - - """ - THIS TEST FAILS ON SCALEOUT DUE TO is_client does not exist - def test_grant_access_to_client(self): - response = self.client.post( - "/accounts/login/", {"username": test_user_1["email"], "password": test_user_1["password"]} - ) - response.status_code - - self.assertEqual(response.status_code, 302) - - project = self.get_data() - - response = self.client.post( - f"/{self.user.username}/{project.slug}/project/access/grant", - {"selected_user":test_client["email"]}, - ) - - self.assertEqual(response.status_code, 302) - - project = Project.objects.get(name="test-perm") - - authorized = project.authorized.all() - - self.assertEquals(len(authorized), 0) - """ diff --git a/projects/views.py b/projects/views.py index 170a8a769..04de9c7d2 100644 --- a/projects/views.py +++ b/projects/views.py @@ -5,10 +5,11 @@ import requests as r from django.apps import apps from django.conf import settings as django_settings +from django.contrib import messages from django.contrib.auth import get_user_model from django.contrib.auth.decorators import login_required from django.core.exceptions import FieldDoesNotExist -from django.db.models import Q +from django.db.models import Model, Q from django.http import ( HttpResponse, HttpResponseBadRequest, @@ -20,7 +21,7 @@ from django.utils.decorators import method_decorator from django.views import View from guardian.decorators import permission_required_or_403 -from guardian.shortcuts import assign_perm, remove_perm +from guardian.shortcuts import assign_perm, get_users_with_perms, remove_perm from apps.app_registry import APP_REGISTRY from apps.models import BaseAppInstance @@ -33,7 +34,6 @@ logger = logging.getLogger(__name__) Apps = apps.get_model(app_label=django_settings.APPS_MODEL) AppCategories = apps.get_model(app_label=django_settings.APPCATEGORIES_MODEL) -Model = apps.get_model(app_label=django_settings.MODELS_MODEL) User = get_user_model() @@ -86,6 +86,9 @@ def settings(request, project_slug): Q(slug=project_slug), ).first() + if request.user.is_superuser and project.status == "deleted": + return HttpResponse("This project has been deleted by the user.") + try: User._meta.get_field("is_user") platform_users = User.objects.filter( @@ -102,7 +105,9 @@ def settings(request, project_slug): ) environments = Environment.objects.filter(project=project) - apps = Apps.objects.all().order_by("slug", "-revision").distinct("slug") + apps_with_environment_option = ( + Apps.objects.filter(environment__isnull=False).order_by("slug", "-revision").distinct("slug") + ) flavors = Flavor.objects.filter(project=project) @@ -171,26 +176,49 @@ def change_description(request, project_slug): ) +def can_model_instance_be_deleted(field_name: str, instance: Model) -> bool: + """ + Check if a model instance can be deleted by ensuring no app in APP_REGISTRY + references it via the specified field. + + Args: + field_name (str): The name of the field to check in APP_REGISTRY models. + instance (Model): The model instance to check. + + Returns: + bool: True if the instance can be safely deleted, False otherwise. + """ + for app_orm in APP_REGISTRY.iter_orm_models(): + if hasattr(app_orm, field_name): + queryset = app_orm.objects.filter(**{field_name: instance}) + if queryset.exists(): + return False + return True + + @login_required @permission_required_or_403("can_view_project", (Project, "slug", "project_slug")) def create_environment(request, project_slug): - # TODO: Ensure that user is allowed to create environment in this project. - if request.method == "POST": - project = Project.objects.get(slug=project_slug) - name = request.POST.get("environment_name") - repo = request.POST.get("environment_repository") - image = request.POST.get("environment_image") - app_pk = request.POST.get("environment_app") - app = Apps.objects.get(pk=app_pk) - environment = Environment( - name=name, - slug=name, - project=project, - repository=repo, - image=image, - app=app, - ) - environment.save() + project = Project.objects.get(slug=project_slug) + if not request.user.is_superuser: + return HttpResponseForbidden() + else: + if request.method == "POST": + # TODO: check input data + name = request.POST.get("environment_name") + repo = request.POST.get("environment_repository") + image = request.POST.get("environment_image") + app_pk = request.POST.get("environment_app") + app = Apps.objects.get(pk=app_pk) + environment = Environment( + name=name, + slug=name, + project=project, + repository=repo, + image=image, + app=app, + ) + environment.save() return HttpResponseRedirect( reverse( "projects:settings", @@ -202,13 +230,24 @@ def create_environment(request, project_slug): @login_required @permission_required_or_403("can_view_project", (Project, "slug", "project_slug")) def delete_environment(request, project_slug): - if request.method == "POST": - project = Project.objects.get(slug=project_slug) - pk = request.POST.get("environment_pk") - # TODO: Check that the user has permission to delete this environment. - environment = Environment.objects.get(pk=pk, project=project) - environment.delete() + project = Project.objects.get(slug=project_slug) + if not request.user.is_superuser: + return HttpResponseForbidden() + else: + if request.method == "POST": + pk = request.POST.get("environment_pk") + environment = Environment.objects.get(pk=pk, project=project) + + can_environment_be_deleted = can_model_instance_be_deleted("environment", environment) + if can_environment_be_deleted: + environment.delete() + else: + messages.error( + request, + "Environment cannot be deleted because it is currently used by at least one app \ + (can also be a deleted app).", + ) return HttpResponseRedirect( reverse( "projects:settings", @@ -220,29 +259,31 @@ def delete_environment(request, project_slug): @login_required @permission_required_or_403("can_view_project", (Project, "slug", "project_slug")) def create_flavor(request, project_slug): - # TODO: Ensure that user is allowed to create flavor in this project. - if request.method == "POST": - # TODO: Check input - project = Project.objects.get(slug=project_slug) - logger.info(request.POST) - name = request.POST.get("flavor_name") - cpu_req = request.POST.get("cpu_req") - mem_req = request.POST.get("mem_req") - ephmem_req = request.POST.get("ephmem_req") - cpu_lim = request.POST.get("cpu_lim") - mem_lim = request.POST.get("mem_lim") - ephmem_lim = request.POST.get("ephmem_lim") - flavor = Flavor( - name=name, - project=project, - cpu_req=cpu_req, - mem_req=mem_req, - cpu_lim=cpu_lim, - mem_lim=mem_lim, - ephmem_req=ephmem_req, - ephmem_lim=ephmem_lim, - ) - flavor.save() + project = Project.objects.get(slug=project_slug) + if not request.user.is_superuser: + return HttpResponseForbidden() + else: + if request.method == "POST": + # TODO: Check input + logger.info(request.POST) + name = request.POST.get("flavor_name") + cpu_req = request.POST.get("cpu_req") + mem_req = request.POST.get("mem_req") + ephmem_req = request.POST.get("ephmem_req") + cpu_lim = request.POST.get("cpu_lim") + mem_lim = request.POST.get("mem_lim") + ephmem_lim = request.POST.get("ephmem_lim") + flavor = Flavor( + name=name, + project=project, + cpu_req=cpu_req, + mem_req=mem_req, + cpu_lim=cpu_lim, + mem_lim=mem_lim, + ephmem_req=ephmem_req, + ephmem_lim=ephmem_lim, + ) + flavor.save() return HttpResponseRedirect( reverse( "projects:settings", @@ -254,12 +295,25 @@ def create_flavor(request, project_slug): @login_required @permission_required_or_403("can_view_project", (Project, "slug", "project_slug")) def delete_flavor(request, project_slug): - if request.method == "POST": - project = Project.objects.get(slug=project_slug) - pk = request.POST.get("flavor_pk") - # TODO: Check that the user has permission to delete this flavor. - flavor = Flavor.objects.get(pk=pk, project=project) - flavor.delete() + project = Project.objects.get(slug=project_slug) + if not request.user.is_superuser: + return HttpResponseForbidden() + else: + if request.method == "POST": + project = Project.objects.get(slug=project_slug) + pk = request.POST.get("flavor_pk") + flavor = Flavor.objects.get(pk=pk, project=project) + + can_flavor_be_deleted = can_model_instance_be_deleted("flavor", flavor) + + if can_flavor_be_deleted: + flavor.delete() + else: + messages.error( + request, + "Flavor cannot be deleted because it is currently used by at least one app \ + (can also be a deleted app).", + ) return HttpResponseRedirect( reverse( @@ -387,7 +441,9 @@ def get(self, request): template = arr[0] if len(arr) > 0 else None - context = {"template": template} + context = { + "template": template, + } return render( request=request, @@ -407,6 +463,30 @@ def post(self, request, *args, **kwargs): name = request.POST.get("name", "default")[:200] description = request.POST.get("description", "") + # Ensure no duplicate project name for the common user + + project_name_already_exists = ( + Project.objects.filter( + owner=request.user, + name=name, + ) + .exclude(status="deleted") + .exists() + ) + + if project_name_already_exists and not request.user.is_superuser: + pre_selected_template = request.GET.get("template") + template = ProjectTemplate.objects.filter(name=pre_selected_template).first() + context = {"template": template} + logger.error("A project with name '" + name + "' already exists.") + + messages.error( + request, + "Project cannot be created because a project with name '" + name + "' already exists.", + ) + + return render(request, self.template_name, context) + # Try to create database project object. try: project = Project.objects.create_project( @@ -462,6 +542,10 @@ class DetailsView(View): def get(self, request, project_slug): project = Project.objects.get(slug=project_slug) + + if request.user.is_superuser and project.status == "deleted": + return HttpResponse("This project has been deleted by the user.") + resources = [] app_ids = [] if request.user.is_superuser: @@ -503,6 +587,7 @@ def get(self, request, project_slug): "title": category.name, "instances": instances_per_category_list, "apps": apps_per_category, + "timezone": "Europe/Stockholm Timezone", } ) @@ -542,6 +627,11 @@ def delete(request, project_slug): project = Project.objects.filter(slug=project_slug).first() logger.info("SCHEDULING DELETION OF ALL INSTALLED APPS") + # remove permissions to see this project + users_with_permission = get_users_with_perms(project) + for user in users_with_permission: + remove_perm("can_view_project", user, project) + # set the status to 'deleted' project.status = "deleted" project.save() delete_project.delay(project.pk) diff --git a/pyproject.toml b/pyproject.toml index aa6c55b81..fc431f05f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,6 +52,7 @@ Pillow = "10.2.0" flatten-json = "==0.1.13" PyYAML = "==6.0.1" Markdown = ">=3.4,<3.6" +kubernetes-validate = "==1.31.0" # Logging django-structlog = "^7.1.0" @@ -72,6 +73,7 @@ pytest-xdist = { version = "^3.5.0", optional = true } django-axes = {extras = ["ipware"], version = "^6.3.0"} django-password-validators = "^1.7.3" django-htmx = "^1.18.0" +regex = "^2024.11.6" [tool.poetry.extras] linters = ["black", "isort", "flake8", "mypy"] diff --git a/static/images/scilifelab_serve_logo.svg b/static/images/scilifelab_serve_logo.svg index 9cf9f9abe..8f364229d 100644 --- a/static/images/scilifelab_serve_logo.svg +++ b/static/images/scilifelab_serve_logo.svg @@ -1 +1,123 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/static/js/form-helpers.js b/static/js/form-helpers.js index 87dda2698..7dc0cb054 100644 --- a/static/js/form-helpers.js +++ b/static/js/form-helpers.js @@ -8,6 +8,7 @@ window.onload = (event) => { const domainRegex = /^(?:(?!\b(?:student|stud)\b\.)[A-Z0-9](?:[\.A-Z0-9-]{0,61}[A-Z0-9])?\.)*?(uu|lu|gu|su|umu|liu|ki|kth|chalmers|ltu|hhs|slu|kau|lth|lnu|oru|miun|mau|mdu|bth|fhs|gih|hb|du|hig|hh|hkr|his|hv|ju|sh)\.se$/i; function changeVisibility() { + let shouldHide = false; let match; @@ -30,23 +31,27 @@ window.onload = (event) => { department_label.classList.remove('required'); } - if (shouldHide) { - request_account_field.classList.add('hidden'); - } else { - request_account_field.classList.remove('hidden'); - request_account_label.classList.add('required'); + if (request_account_field){ // to prevent Uncaught TypeError for null value + if (shouldHide) { + request_account_field.classList.add('hidden'); + } else { + request_account_field.classList.remove('hidden'); + request_account_label.classList.add('required'); + } } } - // Temporarily disable transitions - request_account_field.style.transition = 'none'; + if (request_account_field){ // to prevent Uncaught TypeError for null value + // Temporarily disable transitions + request_account_field.style.transition = 'none'; - changeVisibility(); + changeVisibility(); - // Restore transitions after a short delay - setTimeout(() => { - request_account_field.style.transition = ''; - }, 50); + // Restore transitions after a short delay + setTimeout(() => { + request_account_field.style.transition = ''; + }, 50); + } email.addEventListener('input', changeVisibility); }; diff --git a/studio/negotiation.py b/studio/negotiation.py new file mode 100644 index 000000000..185eec0ae --- /dev/null +++ b/studio/negotiation.py @@ -0,0 +1,26 @@ +from rest_framework.negotiation import BaseContentNegotiation +from rest_framework.parsers import BaseParser +from rest_framework.renderers import BaseRenderer +from rest_framework.request import Request + + +class IgnoreClientContentNegotiation(BaseContentNegotiation): + """ + This content negotiation class always selects the first parser or renderer + + See https://www.django-rest-framework.org/api-guide/content-negotiation/#custom-content-negotiation + """ + + def select_parser(self, request: Request, parsers: list[BaseParser]) -> BaseParser: + """ + Select the first parser in the `.parser_classes` list. + """ + return parsers[0] + + def select_renderer( + self, request: Request, renderers: list[BaseRenderer], format_suffix: str | None + ) -> tuple[BaseRenderer, str]: + """ + Select the first renderer in the `.renderer_classes` list. + """ + return (renderers[0], renderers[0].media_type) diff --git a/studio/settings.py b/studio/settings.py index 44877d9ce..730f6f20f 100644 --- a/studio/settings.py +++ b/studio/settings.py @@ -38,7 +38,6 @@ # Since this file is only used for development, we can have this set to all hosts. ALLOWED_HOSTS = ["*"] - # For django-wiki SITE_ID = 1 # wiki: Sign up, login and logout views should be accessible. @@ -288,11 +287,11 @@ # https://docs.djangoproject.com/en/3.2/topics/i18n/ LANGUAGE_CODE = "en-us" - -TIME_ZONE = "UTC" - USE_I18N = True +# Timezone settings +USE_TZ = True +TIME_ZONE = "Europe/Stockholm" # Media Files for Studio apps MEDIA_URL = "/media/" @@ -533,3 +532,6 @@ ) LOKI_SVC = None + +# k8s cluster version for validation of manifests +CLUSTER_VERSION = "1.28" diff --git a/studio/views.py b/studio/views.py index e433b1b35..1645ed3de 100644 --- a/studio/views.py +++ b/studio/views.py @@ -25,6 +25,7 @@ from studio.utils import get_logger from .helpers import do_delete_account +from .negotiation import IgnoreClientContentNegotiation logger = get_logger(__name__) @@ -109,6 +110,7 @@ def authenticate_header(self, request: Response) -> str: class AuthView(APIView): authentication_classes = [ModifiedSessionAuthentication, TokenAuthentication] permission_classes = [IsAuthenticated, AccessPermission] + content_negotiation_class = IgnoreClientContentNegotiation def get(self, request: Response, format: str | None = None) -> Response: content = { diff --git a/templates/apps/create_base.html b/templates/apps/create_base.html index 201b17daf..d1226c7ed 100644 --- a/templates/apps/create_base.html +++ b/templates/apps/create_base.html @@ -5,7 +5,7 @@ {% load crispy_forms_tags %} {% block content %} - +{% load get_setting %} {% include "breadcrumbs/bc_app_create.html" %}
@@ -16,12 +16,11 @@

Edit {{ form.instance.name }}

{% else %}

Create {{ form.model_name }}

-

+ {% endif %} +

{% block app_info %} {% endblock %} -

- {% endif %} - +
{% crispy form %} @@ -122,6 +121,19 @@

Create {{ form.model_name }}

} } + // SS-1176 Users are able to set a custom default start URL for their apps + const subdomainInput = document.getElementById("id_subdomain"); + const customDefaultUrlFormModifiedUrlText = document.getElementById("id_custom_default_url_prepend"); + + function updateUrlWithSubdomain() { + try { + const subdomainValue = subdomainInput.value.trim(); + const displayValue = subdomainValue || "subdomain_name"; + customDefaultUrlFormModifiedUrlText.innerHTML = `${displayValue}.{% get_setting 'DOMAIN' %}/`; + } catch (error) { + console.log("No custom url subpath option in this app type."); + } + } // User is "finished typing," do something function doneTyping () { @@ -141,6 +153,7 @@

Create {{ form.model_name }}

// OK because the input form and the server does the same. checkSubdomainValidity(subdomain_input.toLowerCase()); } + updateUrlWithSubdomain(); } function selectValidation(event) { doneTyping(event.target.value); @@ -183,6 +196,7 @@

Create {{ form.model_name }}

}); htmx.onLoad(function(content) { runScript(); + updateUrlWithSubdomain(); }) diff --git a/templates/apps/create_view.html b/templates/apps/create_view.html index f2b52b42c..26141a8a6 100644 --- a/templates/apps/create_view.html +++ b/templates/apps/create_view.html @@ -2,15 +2,19 @@ {% block app_info %} {% if app_slug == 'customapp' %} -

This form allows you to start hosting a custom app that fulfills certain requirements on SciLifeLab Serve (the app itself can be built on any framework). Please read our documentation page on custom apps for the list of requirements and step-by-step instructions on deployment.

+

This form allows you to host a custom app that fulfills certain requirements on SciLifeLab Serve (the app itself can be built on any framework). Please read our documentation page on custom apps for the list of requirements and step-by-step instructions on deployment.

{% elif app_slug == 'dashapp' %} -

This form allows you to start hosting a Dash app at SciLifeLab Serve. Please read our documentation page on Dash apps for step-by-step instructions.

+

This form allows you to host a Dash app at SciLifeLab Serve. Please read our documentation page on Dash apps for step-by-step instructions.

{% elif app_slug in 'shinyapp,shinyproxyapp' %} -

This form allows you to start hosting a Shiny app at SciLifeLab Serve. Please read our documentation page on Shiny apps for step-by-step instructions.

+

This form allows you to host a Shiny app at SciLifeLab Serve. Please read our documentation page on Shiny apps for step-by-step instructions.

{% elif app_slug == 'tissuumaps' %} -

This form allows you to start hosting your own TissUUmaps instance at SciLifeLab Serve. After your app has been created you will need to upload the data to your project. We suggest that you create the app with Permissions initially set to Private, upload the data, and then edit the app settings to change the Permissions to Public. Please read our documentation page on TissUUmaps apps for step-by-step instructions.

+

This form allows you to host your own TissUUmaps instance at SciLifeLab Serve. After your app has been created you will need to upload the data to your project. We suggest that you create the app with Permissions initially set to Private, upload the data, and then edit the app settings to change the Permissions to Public. Please read our documentation page on TissUUmaps apps for step-by-step instructions.

+ {% elif app_slug == 'gradio' %} +

This form allows you to host a Gradio app at SciLifeLab Serve. Please read our documentation page on Gradio apps for step-by-step instructions.

+ {% elif app_slug == 'streamlit' %} +

This form allows you to host a Streamlit app at SciLifeLab Serve. Please read our documentation page on Streamlit apps for step-by-step instructions.

{% endif %} - {% if app_slug in 'jupyter-lab,rstudio,vscode' %} + {% if app_slug in 'jupyter-lab,rstudio,vscode' and not app_id %}

Note that after 7 days the created {{ form.model_name }} instance will be deleted, only the files saved in 'project-vol' will stay available.

Each {{ form.model_name }} instance can get access to the persistent volume (folder) associated with this project, called 'project-vol'. Please make sure to save all your data files, script files, output from computations, etc. inside 'project-vol'; the files located elsewhere can be deleted at any point. The files saved inside 'project-vol' will be available across all instances of {{ form.model_name }} (as well as other apps) within this project.

diff --git a/templates/apps/partials/srv_prepend_append_input_group.html b/templates/apps/partials/srv_prepend_append_input_group.html index 4fee8451e..d43494909 100644 --- a/templates/apps/partials/srv_prepend_append_input_group.html +++ b/templates/apps/partials/srv_prepend_append_input_group.html @@ -2,7 +2,7 @@
{% if crispy_prepended_text %} - {{ crispy_prepended_text }} + {{ crispy_prepended_text }} {% endif %} {{ field }} {% if crispy_appended_text %} diff --git a/templates/common/app_card.html b/templates/common/app_card.html index 5b2c0f9fe..62b900819 100644 --- a/templates/common/app_card.html +++ b/templates/common/app_card.html @@ -78,7 +78,7 @@
{{ app.name }}
{% else %} Open {% endif %} - {% if app.app.slug in 'shinyapp,shinyproxyapp,dashapp,customapp' %} + {% if app.app.slug in 'shinyapp,shinyproxyapp,dashapp,customapp,gradio,streamlit' %} {% if app.pvc == None %} diff --git a/templates/portal/home.html b/templates/portal/home.html index b615578c9..feff80fa2 100644 --- a/templates/portal/home.html +++ b/templates/portal/home.html @@ -65,47 +65,12 @@
Development environments

Recent updates

+
+ {% for app in published_apps_updated_on %}
-
Recently updated
-
- {% for app in published_apps_updated_on %} -
-
-
- -
{{ app.name|truncatechars:30 }}
- -
- {% static 'images/logos/apps/' as static_url %} - App Logo -
-
-
- {{ app.description|truncatechars:100 }} -
-
- -
-
- {{ app.app.name }} -
-
- Last updated: {{ app.updated_on|date:"d M, Y" }} -
-
-
- {% endfor %} -
- -
-
Recently created
-
- {% for app in published_apps_created_on %} -
+
@@ -128,13 +93,18 @@
{{ app.name|truncatechars:30 }}
{{ app.app.name }}
+ {% if app.updated_on|date:'d M, Y' == app.created_on|date:'d M, Y' %} Created: {{ app.created_on|date:"d M, Y" }} + {% else %} + Updated: {{ app.updated_on|date:"d M, Y" }} + {% endif %}
- {% endfor %}
-
+ {% endfor %} + +
Browse all apps and models
diff --git a/templates/projects/partials/app_instances_table.html b/templates/projects/partials/app_instances_table.html index 62e020846..559191f85 100644 --- a/templates/projects/partials/app_instances_table.html +++ b/templates/projects/partials/app_instances_table.html @@ -1,5 +1,4 @@ {% load static %} - @@ -40,7 +39,11 @@ {% else %} {% endif %} - +
{{ instance.name }}{{ instance.created_on | date:"d/n/y H:i" }}{{ instance.created_on | date:"d/n/y H:i" }} + + + {{ instance.app_status.status }} diff --git a/templates/projects/partials/app_templates.html b/templates/projects/partials/app_templates.html index fddc7f4e9..5f21b4b77 100644 --- a/templates/projects/partials/app_templates.html +++ b/templates/projects/partials/app_templates.html @@ -25,19 +25,9 @@
{{ app.name }}
{% if can_create %} - - {% if "Serv" in app.name or app.name == "Python Model Deployment" %} - Create - {% else %} - Create - - {% endif %} - - {% else %}