From 65d7c4e5d8b21ef9519c03d53868d5e7de66e796 Mon Sep 17 00:00:00 2001 From: LianeHughes <68756672+LianeHughes@users.noreply.github.com> Date: Thu, 19 May 2022 15:06:08 +0200 Subject: [PATCH 1/2] =?UTF-8?q?delete=20sk=C3=A5ne=20repeat,=20add=20stock?= =?UTF-8?q?holm?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Biobank för kritiskt sjuka och frivilliga i Region Skåne was duplicated. Is now deleted and ID corrected in the one remaining. the 11th entry was added to the stockholm database. --- content/collections/136/1.md | 2 +- content/collections/136/3.md | 48 ----------------------------------- content/collections/914/11.md | 48 +++++++++++++++++++++++++++++++++++ 3 files changed, 49 insertions(+), 49 deletions(-) delete mode 100644 content/collections/136/3.md create mode 100644 content/collections/914/11.md diff --git a/content/collections/136/1.md b/content/collections/136/1.md index a4e7308..a7cc870 100644 --- a/content/collections/136/1.md +++ b/content/collections/136/1.md @@ -1,5 +1,5 @@ --- -id: c19dp:collection:SE_1136_3 +id: c19dp:collection:SE_1136_1 biobank: c19dp:biobank:SE_1136 name: Biobank för kritiskt sjuka och frivilliga i Region Skåne acronym: SWECRITcovid19 diff --git a/content/collections/136/3.md b/content/collections/136/3.md deleted file mode 100644 index a4e7308..0000000 --- a/content/collections/136/3.md +++ /dev/null @@ -1,48 +0,0 @@ ---- -id: c19dp:collection:SE_1136_3 -biobank: c19dp:biobank:SE_1136 -name: Biobank för kritiskt sjuka och frivilliga i Region Skåne -acronym: SWECRITcovid19 -parent_collection: -local_id: SC-1922 -bbmri_id: -country: SE -description: SWECRIT är ett samlingsnamn för en provsamling som har samlat blodprover från kritiskt sjuka IVA-patienter i Region Skåne sedan 2014 (2014/47). SWECRITcovid 19 är en fortsättning på samarbetet i Reg Skåne som startade i samband med pandemin i maj 2020 och avslutades maj 2021 (n=519). Vi har samlat seriella blodprover (helblod, plasma, serum) under IVA-vården (ankomst, dag 2 & 7) och vid uppföljningar efter 3 och 12 mån från kritiskt sjuka IVA-vårdade RT-PCR-verifierade covid-19 patienter. Samtycke inkluderar genetik. Kliniska data har samlats in via kvalitetsregistret covid-IR i Reg Skåne. Standardiserad uppföljning av overlevare efter 3-6, 12, och 36 mån. -website_url: -bioresource_reference: -ethics_id: 2014/47, 2016/252, 2020-01955 -sampling_startdate: 2020-05-11T10:00:00+0000 -sampling_enddate: 2021-05-11T10:00:00+0000 -storage_duration: 2026-01-01T11:00:00+0000 -collection_type: [Disease specific, Hospital, Sample] -collection_category: "Research sample collection" -data_categories: [Biological samples, Medical records] -order_of_magnitude: 3 -timestamp: 2021-08-14T10:00:00+0000 -biobank_label: -sub_collections: -diagnosis_available: -order_of_magnitude_donors: 2 -autopsy: FALSE -minors: FALSE -inclusion_criteria: Adult critically ill RT-PCR verified covid-19 patients and treated in an intensive care unit in Region Skåne during one full year -exclusion_criteria: No consent, Age < 18 years -materials: [Plasma,Serum,Whole Blood] -head_firstname: Hans -head_lastname: Friberg -head_role: -display_collection_contact: TRUE -contact: c19dp:contact:SE_1136_1 -publications_list: -contact_priority: 1 -aliases: - /menu/main/app-scd/collection/c19dp:collection:SE_1136_3 -collection_contact: - id: c19dp:contact:SE_1136_1 - bbmri_id: - title_before_name: - first_name: Hans - last_name: Friberg - title_after_name: - email: hans.friberg@skane.se ---- diff --git a/content/collections/914/11.md b/content/collections/914/11.md new file mode 100644 index 0000000..24a906b --- /dev/null +++ b/content/collections/914/11.md @@ -0,0 +1,48 @@ +--- +id: c19dp:collection:SE_1914_11 +biobank: c19dp:biobank:SE_1914 +name: The COVID-19 Immunity study +acronym: COMMUNITY +parent_collection: +local_id: N/A +bbmri_id: +country: SE +description: The COMMUNITY pandemic surveillance cohort was initiated in April 2020 and comprises 2149 healthcare workers and 118 COVID-19 patients. Blood samples are collected every four months. Serological and cellular immune responses are continuously mapped to demography, vaccination(s) and prior infection. qPCR screening programs, including viral sequencing and culturing, are conducted during time points with high viral transmission and in response to the threat of emerging variants of concern (VOC). +website_url: +bioresource_reference: +ethics_id: 2020-01653 +sampling_startdate: 2020-04-01T11:00:00+0000 +sampling_enddate: +storage_duration: +collection_type: [Disease specific, Hospital, Sample] +collection_category: "Research sample collection" +data_categories: [Biological samples, Medical records] +order_of_magnitude: 4 +timestamp: 2022-05-17T06:46:41+0000 +biobank_label: +sub_collections: +diagnosis_available: +order_of_magnitude_donors: 3 +autopsy: FALSE +minors: FALSE +inclusion_criteria: COVID-19 patients admitted to Danderyd hospital. Inclusion criterion was COVID-19 diagnosis based on reverse-transcriptase polymerase chain reaction viral RNA detection of nasopharyngeal or oropharyngeal swabs or clinical presentation. Healthcare workers at Danderyd hospital. +exclusion_criteria: +materials: [Buffy Coat,Nasal swab,PBMC,Peripheral blood cells,Plasma,Serum] +head_firstname: Charlotte +head_lastname: Thålin +head_role: +display_collection_contact: TRUE +contact: c19dp:contact:SE_1914_8 +publications_list: +contact_priority: 1 +aliases: + /menu/main/app-scd/collection/c19dp:collection:SE_1914_11 +collection_contact: + id: c19dp:contact:SE_1914_8 + bbmri_id: + title_before_name: + first_name: Charlotte + last_name: Thålin + title_after_name: + email: charlotte.thalin@ki.se +--- From a7a9b7911ac4afa41bf540cbdb7f68c3862aba9c Mon Sep 17 00:00:00 2001 From: LianeHughes <68756672+LianeHughes@users.noreply.github.com> Date: Fri, 20 May 2022 06:45:25 +0200 Subject: [PATCH 2/2] minor correction to alias --- content/collections/136/1.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/collections/136/1.md b/content/collections/136/1.md index a7cc870..50519e2 100644 --- a/content/collections/136/1.md +++ b/content/collections/136/1.md @@ -36,7 +36,7 @@ contact: c19dp:contact:SE_1136_1 publications_list: contact_priority: 1 aliases: - /menu/main/app-scd/collection/c19dp:collection:SE_1136_3 + /menu/main/app-scd/collection/c19dp:collection:SE_1136_1 collection_contact: id: c19dp:contact:SE_1136_1 bbmri_id: