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Update pangenome files for cd-hit #16

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siddC opened this issue Sep 26, 2024 · 0 comments
Open

Update pangenome files for cd-hit #16

siddC opened this issue Sep 26, 2024 · 0 comments
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bug Something isn't working enhancement New feature or request

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@siddC
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siddC commented Sep 26, 2024

The current pangenome script cannot handle cases where 2 identical locus tags exist for different sequences. This happens from time to time when prokka/bakta is called for annotation. These scripts need to be updated to reflect this and be more inline with other pangenome generation tools' outputs.
@siddC siddC added bug Something isn't working enhancement New feature or request labels Sep 26, 2024
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