From 280a9d66d3e1d79703816b23207f064fbc51fbcb Mon Sep 17 00:00:00 2001 From: Dave Lawrence Date: Tue, 16 Jan 2024 15:02:27 +1030 Subject: [PATCH] Add Ensembl 111 --- CHANGELOG.md | 2 +- generate_transcript_data/ensembl_transcripts_grch38.sh | 2 +- generate_transcript_data/json_schema_version.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 68b7cf9..0160439 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,7 @@ ### Added -- New GFFs: RefSeq RS_2023_10, Ensembl VEP110 +- New GFFs: RefSeq RS_2023_10, Ensembl 110, 111 - #66 - We now store 'Note' field (thanks holtgrewe for suggestion) - Added requirements.txt for 'generate_transcript_data' sections - client / JSON data schema version compatability check diff --git a/generate_transcript_data/ensembl_transcripts_grch38.sh b/generate_transcript_data/ensembl_transcripts_grch38.sh index cccea40..be7d6b3 100755 --- a/generate_transcript_data/ensembl_transcripts_grch38.sh +++ b/generate_transcript_data/ensembl_transcripts_grch38.sh @@ -25,7 +25,7 @@ fi #81 is first GFF3 for GRCh38 merge_args=() -for release in 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110; do +for release in 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111; do # Switched to using GTFs as they contain protein version filename=Homo_sapiens.GRCh38.${release}.gff3.gz url=ftp://ftp.ensembl.org/pub/release-${release}/gff3/homo_sapiens/${filename} diff --git a/generate_transcript_data/json_schema_version.py b/generate_transcript_data/json_schema_version.py index 0fd4ae4..5301557 100644 --- a/generate_transcript_data/json_schema_version.py +++ b/generate_transcript_data/json_schema_version.py @@ -1,3 +1,3 @@ # After 0.2.22 we split version into separate code (pip) and data schema versions # The cdot client will use its own major/minor to determine whether it can read these data files -JSON_SCHEMA_VERSION = "0.2.22" +JSON_SCHEMA_VERSION = "0.2.23"