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Scaffold should be supported in Pogo #6

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ypriverol opened this issue Oct 30, 2017 · 1 comment
Open

Scaffold should be supported in Pogo #6

ypriverol opened this issue Oct 30, 2017 · 1 comment

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@ypriverol
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The current scaffold translation into UCSC scaffold representation is not yet supported in Pogo. We need to contact the ENSEMBL team to get the mapping table between the ENSEMBL representation and the UCSC for SCAFFOLDs.
@mbdebian
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mbdebian commented Nov 9, 2017

We'll have a chat about the feasibility of this given the time constraints and the fact that we're finishing the integration of the tool in the submission pipeline, to complete the first iteration of the software.

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@ypriverol @mbdebian