From e858664202c36ab7bd1a971d5b4e5fa92ce5d0bf Mon Sep 17 00:00:00 2001
From: PengJia6 <pengjia1110@gmail.com>
Date: Wed, 17 Jun 2020 14:24:39 +0800
Subject: [PATCH] addcramindex

---
 .idea/workspace.xml                    |   4 ++--
 gitsub                                 |   1 +
 src/__pycache__/bam2dis.cpython-37.pyc | Bin 9548 -> 9572 bytes
 src/bam2dis.py                         |   1 +
 4 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index 143844f..8ccdff5 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -3,8 +3,8 @@
   <component name="ChangeListManager">
     <list default="true" id="30b9b241-2c99-4401-8c9c-ae5f21564a70" name="Default Changelist" comment="">
       <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/src/call.py" beforeDir="false" afterPath="$PROJECT_DIR$/src/call.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/src/main.py" beforeDir="false" afterPath="$PROJECT_DIR$/src/main.py" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/gitsub" beforeDir="false" afterPath="$PROJECT_DIR$/gitsub" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/src/bam2dis.py" beforeDir="false" afterPath="$PROJECT_DIR$/src/bam2dis.py" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
diff --git a/gitsub b/gitsub
index c0b6ff6..b3adcaa 100755
--- a/gitsub
+++ b/gitsub
@@ -1,3 +1,4 @@
+git pull 
 git add . 
 git commit -m $1
 git push origin master
diff --git a/src/__pycache__/bam2dis.cpython-37.pyc b/src/__pycache__/bam2dis.cpython-37.pyc
index 2266cdd74ac50aa52a9da9fc7492eb44d0a70c44..a32afe9cab1f9c3fd63bd6aa893b372206e3bc06 100644
GIT binary patch
delta 1197
zcmYjQ$!{BV6rSfT)3}M3Y+h<Rw&N6sv?*nY0%=vigeYozi7C;P)SY;oWYY1HHv`>_
zN|k~@LhAC46e+oJMZV+!;vYcb!pSF)C?balZit?EZ!AIP@Xa^h`}BTq`OS|@zby^E
zH89Yx@bl5rgKO&fZwEi|LAUeJw+k>uX96RT?kofjAaaT=U1)V-8&#%Q>|9W<dSINM
z_Rsp#tk8G<IQ`XMf=PNccyF#KrYQ#Pm{Dsvn{Vrug^~md0%rtX5{L<$7I;};vU3>x
z$qOa=K6H|^KMQ>Y3v@rc0u$5?kH_C+Pd8$$UoxxMT-KeMWtmRR#swOR{0uevBQhK4
zC8I)g9yVw#dMmIYiSzVJbQKz%^F#XpmpXqBm;A9T2ejZ79ZkLAESOdeb7IwKIWZY4
zNl?`dqhgtjS~sxX#JcX_HF}&VLzR9{OoL5BNeAxI=gAp0&-NnVZTcZO18w><84rH|
zit-3<mD^C__v#YGPVCROJzJr6V5{FaKCc)9yJ2I{2t80(jqFDEl#;Rod*H^y^P&#9
zJmT_U3a4Ua$IJ5QPR}&VNk-T*=EMxv;)*fGO6;goiMN&AL_4qtplqw}D~7VH6yukl
z!`0`oiYN^)l9kE?gF<CxI8BdJ7u6N%$crg@mdf}u{86A|={H_<_vdbMRJ<QDXr6b=
z<zf<j%)4H*;h<kaE7VLUR__R1bR$?>@A}LJPjW&;xp#QvRQcQzkjvBc^J44vk(=`0
z!CIfK*IO2^U87&qBbnQ5*HlAy^oyqL;JT#f^(E|68p%w-D|8`ql4_Yq;0qC7>$Eff
zKthT~M}SwQU|HZDfkk?ljlnj3lfBQka4L6hbeZJ?55pZ#p;+|b4Y67DaV~fHu24;&
z#-OQOIAZgrjSoa~TlEUNDe#_vj26!dGz8p|+RTaxyiSL?@l!h@M+Bk*?qOdFb9+5r
zZ8jWp!>+iqT%*_XCkCW;&0lBDz|W|fpMyGmoln3F?dNa66PlQqz1Lz7-_h&x^7JZx
z^1p=cK3y1NwcEF**UuWJy~(q&Wwi>ZfFvQcQmN}^qf#k`aFYehGH8L8-Y|3<uZSgN
zWA*fg)m+o9ieXkA^eWSAlnJ5xL%N;2qm#~iGmvWB6Yv}z2FEB>c%d&Fo>ToQ{0lJf
B8*cyr

delta 1222
zcmYjROK%%h6rSV9WSThfBQHPV*!6>UNFgPtiXz-LYTO1@X@qb{=v2X)=8n@z{mPvw
zF-fGhq)3&Jfb_x&7770Vd6NYd`~Vg#SfF9k1t7YD6^O1l=cYoP(R}xt?;M|d&tv@S
z)gP`7T<Y)dRq%Rz@yUBXpZ{jyUI2{lr-1_iU7S^iA>F;AK85HRbn&3=!6w&`^3&Z}
z?S>CB;;Y{2KpGYCZ7?DJ>McW2oa?(gbDErV1mgs=+U~76vtH*Egck@V3C<G430@(X
zA}EUS;%GMzI`YGucpN^3JNy>@5-yATk#`|4yht`Ni+)~|)vnoVyj3w>t6sNV%i)*B
zVDu+o;*aRGdK^#`V<o7Go3V~squ@F5B(@5T?uEf4fQ9ZqL*-yRiw2`_+2pp_bg$TT
zi=QOd>!Ol;DLzL=&19@vx0{xy)>^z_x_njaCzs%+_&s?BxEM^iuq_^@Cbb;8>%cqW
zyVNA?h(A+_$XlQ&pF!u%T`1$adO^g;j%HctAk6yNzyoF1w-Gsr9x7#J4-R2h-RNcE
z5~(rCBa#nF9xW-ZA1y<BAVTSQnGK;l;*PT6JxC~Qq@=LX7nN#!S2;-Rs)qo|rnaIm
zrK0HZ#b<Ei8LaY6N^)Lw(ixSy#3#hp=>_z{1pItV{GHAO$MK~glH+eo$d<|GjgYU4
zVEE>jmh>bKAou)s)8#=jt%!T$$-5sAotGAF)x3b+#KPrCq*0S&!6%5>1T-pM5L?)A
zUYLvj_cVGOv(c_&gRi5bp|)?Cj>Wv-7RR6HJ-kDz#!S~-upO6Miqfw<PmiKM5EGe~
zVM;7#P7P-vgm(n*7(V<V+0S)9&-@FoQ%>9=z=kQjLQp24G>%7JB_<Q-Bi0t*pS+Lb
zc`0{(<ZTq5`Vh8#MP2vt4RW|GzR2Ykw~5lpIYTfsJT&L6Er;)sCX3=H_CCQ90X2cY
zM$jOTr`$n?)vk(QKD+!O$x(tBf!yq4VzLyWwN}%$*PW`Yx{12cw|0kHP4`-5@lL}y
z;WpYUc9XTXWR^y-fv${yBzE#MV|5B6n=D}zUp;l*a?7^!s`xQ~8}>!1Fr8|lj)PvM
z#dn<D{&PuuQb<j$V-X!14Fxpdk8t(0YPDh7&1zK-^K}$>76H3yHks-0cf>D+q)rv$
e@=KMO%hFNi$2FiGWGr67KZ%Py*~p9*)ZjmCTph9i

diff --git a/src/bam2dis.py b/src/bam2dis.py
index a0e6762..83a21f4 100644
--- a/src/bam2dis.py
+++ b/src/bam2dis.py
@@ -287,6 +287,7 @@ def write_vcf(outputfile, dataList):
         vcfrec.info["motif"] = msDetail.motif
         vcfrec.info["repeatTimes"] = msDetail.repeatTimes
         vcfrec.info["prefix"] = msDetail.prefix
+        vcfrec.info["suffix"] = msDetail.suffix
         vcfrec.info["depth"] = msDetail.depth
         vcfrec.info["support_reads"] = msDetail.support_reads
         vcfrec.info["dis"] = "|".join([str(key) + ":" + str(value) for key, value in msDetail.repeatDict.items()])